mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAGTGGAGTGGACTGGAGT TTTTTACTACTGTACTCTACT TGCTCACCCAGTGGAGTGGAGTGGACTGGAGTGCTACTTTTTACTACTGTACTCTACTAGGTGTGG CCCACGCTCCCGCGCCCCACATATGCTGATCAGAGTAGGACTAGCTTCACCTAGCCAGACTTTGCCACTCCGGTCATTTTCTTGCATCCACGACGGCAATGGCCACCGCTGATGTCCAGAACCCGACGGCCGCGCTGACGGAGGAGGCGCCCGCGGTGGAGACGCCCGTCGCCGCCGAGGAGGTTGCCAAGACAGAGGAGGTCCCCGCGCCGGCGGAGGCCGAAGTCGAGGCGCCTGCCCCCGTCGAGGTTGAGGCGACCAAGGAGGAGGCACCGGCCGCCGCCGAGAGGGAGGATGCCAAGGAGGCCGAGCCAGCAGCTGCGGCCGAGACGGAGGCCGAGGCGCCCAAAGAGCCAGCCGTGGTCGAGACAGAGACCAAGGAGGCCGTGGCATAGGCAGAGCCGGCAGTCGTCGAGGAGGTGAAGGAGGAGGCGGCGCCTGCTGCCGAGCCGGAGGTGCCGGCCGTCGCCGAGGAAGCACCGGCTGCAGCGGAGGAGGCACCCGCGGCCGCGGCAGAGGAGCCGGCCGACGCCGTGGTCAGCGTCAGCGTGTGAGGCGCCGGCGCGCGCGGAGGAGGAGCTGGCTGCGTCAGCGTCCACGGCGGCGGCCGTGTGCTCCTACGTGGCACGGCGTGATGCTCACCCAGTGGAGTGGAGTGGACTGGAGTGCTACTTTTTACTACTGTACTCTACTAGGTGTGGAGTGGAGTGGAGTGCTATGCGCGGGGTCGCGTGACGTGCGCTAAATAACAGTGTTGTCGGTGAGCATCGAGCGAGCGACGCAGTGCCACTCTAGAATAATGTATGCCTTTTATTTTGGTCGATAAGACATGATTCATTATTTCCTACGGACATTGGTTGCTTTTTGCCTGGCAAAAAAAAAAAAAAAGAGCGGGCCCTCTAGAGTATCCCCTCAGGGGCCACGGTTACGGTTACCAAGTTTTCTTGTAAAAAGTGGTCCCCTATAGGGGTCGTTTTTAAGGCAGGCCCGGGCGCCCTTTACAAGGTTCGGACTGGAAATCTGTTTCTTGGGTCTTTGGAAGGGACTTGCCTCTGGGGGGGGCTATTGGAGAACCACCATACAATTTAAGCCCTAGGGTATTAAAATCTAAGGTTTTGGGGA 4 0 5' arm Triticum_aestivum mirnest 100 cre-MIR1171 0.0002 -24.8 ....((((.(((((((((.(((((...(((((...)))))...))))).))))))))).))))... (-24.8)