mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTACTCTCTCCATCCCAAATA TTTTAGAACGGAGGAAGTATAT TGTCGTTGTCTTCCTTGTGTCGTACTCTCTCCATCCCAAATAAGTTGAGTAACTTATTTTAGAACGGAGGAAGTATATCTTTGAGGGCGAGTTTAT CGGACGCGTGGGCGACGGGCTCGCCGTGAGCACGCGCCAGGACCCCTCCACGGGCACCTGCAACTTCACCATACAACTCGAGACCACCTCCGCGGGGGGACGGCCGACGGTACTCTTGACGACGGCCCTGCTCGCCTTGGTTCTTGCGGCCATGGTGACCATGCTCTGAGTCCGAATCTGATTGCTATGCGGTGCTAGTTAGTAGTGACTGGAGAAGTTAACTACATGAAGAAGCTAGAGGTTACACACTTGTAGTTGTAGATATTCTTTTGGTTTGTATACGTGTTACGCTACTGTAGTATATATGATCACAGGACAGGAGCCCATGGACCTCGGATTCCAAGGGTTTATTTAGATGTATAGCCAGAAAGATTGAGCACACTGATGTGCATGTCGTTGTCTTCCTTGTGTCGTACTCTCTCCATCCCAAATAAGTTGAGTAACTTATTTTAGAACGGAGGAAGTATATCTTTGAGGGCGAGTTTATCACCGTGCTCGTGGCTATCANNNNANA 4 1 5' arm Triticum_aestivum mirnest MIR1122 0.00002 100 -22.7 ........((.((((((....(((((.(((((.((..(((((((((....)))))))))..))..))))).))))).....)))))).))...... (-22.7)