mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATTATGGGACGGAGGGAGTA CTCCCTCTGTCCCATAATATA CACTTCATTTCTACTCCCTCTGTCCCATAATATAAGACCGTTTTTGACACGACACTAGTGTAAAAAACGCTCCTATATTATGGGACGGAGGGAGTACCTTACAAGG TGAGTTGGAGACATTCAGACAAAGCAAAAAAATTACTGATACATACAAAGATAGTCCAGTCTCATAACTGGTCGTTCTAGAGTACACATATTAGAACCACTTCATTTCTACTCCCTCTGTCCCATAATATAAGACCGTTTTTGACACGACACTAGTGTAAAAAACGCTCCTATATTATGGGACGGAGGGAGTACCTTACAAGGAATTCAGAAGATTCTGGCACCTTTGTCTTCTGTTTAGAATCCAGAAGATTCTGGCACCTTTGTCTTCTGTTTAAGCCTTGTGGCTCACATCAAATAAGGTCAATTCGACCAGCCTCGACAAGGCCCTTGATGGACTTGTACCGAAGGACATACAAGTCATCAGCCACCAGATCCACAACTTCCTCCCCTACGTCGTCTAGCTGGAATGCTCCTACGTCACTCTTGGTCTTGCAGAAGACAAATGTGTCAAGCTGAGGCTCTGGAACCATGTCATCCTCCGTGCTCGATAAGGATTGCCTCGTTACCGAGTCATAACCGTAGGGAAGCTTTGAC 0 0 3' arm Triticum_aestivum mirnest MIR1122 5e-28 tae-MIR1120 0.000000000000006 -50.3 ...........(((((((((((((((((((((((.((.(((((((.((((.......)))).))))))).)).))))))))))))))))))))))).......... (-50.3)