mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGATACATCCGTATCTAGA TAGATACGGATGTATCTAGC AGATGGCAGTGTTTCTAACTTGTACTCCCTCCGTTCCCAATTACTTGTCTTAGATTTGTCTAGATACGGATGTATCTAGCATTAAAATGAGTCTAGATACATCCGTATCTAGACAAATCCAAGACAAGTAATTTGGAACGGAGGGAGTACGAGTACAATGGAATAGCAGG CCACGCTTCCGCTNAGCAGCCATNCGATCCGATTCGATTCGATCTTTCTCGGCGTCTCGAGCTCCCCATTCCTCGATCTCATTCCATCCATGGCGCCGTCCATCTCCATTGCCGCCGCCTCGCCGGCCTCGGGCTGGAAGAGCGGCAGGAAGGCCGGGGCGGCGCCGGCGGAGGGCGAGGCGGAGAAGGAGGCGCTGCTGCTGCGGCGCCGCAACGCCGAGCTGGAGCGGGAGGTGGCGCTGCTGCGGGCGGAGCTGGAGGCCGCGCGGCTGCGCGCCGAGGCCGCGGAGGAGGCCGAGGAGCGGCTGTGCGCGCAGCTGGGCGAGGCCGAGTGCGAGGCCCTCGAGCTCGCGCGCGCCTACCAGGGCCACGTCCAGGAGCTCGCGCGGGAGCTCGCCGCCGCACGCAGCAGATAGCGGAGCGCCGAGGCCGAGCTCGTCGGTGATTCTTTGACGATCGACGAAGAGACGTGTCGCGCTCTCGACACACGCGGTGCGGCGGCAGTATAGATTTCTAGACAAATGTAAAACGAGGTTAATTAGTATTTTCTTGTCCGAGTATAGATTCCTAGCAAGATGTCCGAGTAAAAAGATGGCAGTGTTTCTAACTTGTACTCCCTCCGTTCCCAATTACTTGTCTTAGATTTGTCTAGATACGGATGTATCTAGCATTAAAATGAGTCTAGATACATCCGTATCTAGACAAATCCAAGACAAGTAATTTGGAACGGAGGGAGTACGAGTACAATGGAATAGCAGGGCGGGAGTATATATTCCTTCCTCCAGAAATATTTGGGGAAGCTCGAGATGTTATCTACTATAATCTAATTCCTGGCCCTTCCGTTGACAAAGAAAAAAAGGATAAAAGGGGGGGCCGGTCCGAAGTATCTCCGCGGGGGCCCAAGCTTTGGGTTACCAGGTTTCTGGTTCAAAGGGGTCCCCTAGGGGGGGCGGTTTATAACCTAGGCACGCGCCGGCCGTTTACAGTTCGGACCGGCGAAACTGCATACCTGGGACTTTGGCGAAGGACCTTAGTCCGTCGGGGGGCATGAGTGACAAAGTCCCTACGAGGACTAACGCGCTCGGGCAAATATAAAAGGGACAGCGCTTAATA 0 0 3' arm Triticum_aestivum mirnest MIR1122 5e-57 tae-MIR1122 6e-16 -98.9 ........((..(((((((((((((((((((((((((.(((((((((((((.(((((((((((((((((((((((((((.(((......)))))))))))))))))))))))))))))).))))))))))))).))))))))))))))))))))....)))))..))... (-98.9)