mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGACGATTTCTGCATCGGCGA GCTGGTGCTGATTCGACAGA ATTCTAAACAATGCTGGTGCTGATTCGACAGAGGGATTTTTCGGGCCGCAACATGGCACGAGAGTCTTCGATATCATTGACGATTTCTGCATCGGCGAATTGAAAGA GGCACGAGGCTTTGCTCGATTTCCCCGACGCTGTTCTCCAGAACATTACTTTCAATACATTGTTCAGTAGTTCCTGAGGTACCCAATGGAAATTATCATCCTCATCTCACTTGTTGTGCTTCTTGTACTGGGAGCACTCTTTGTTATCCCAAGATCCATCAGCAAAGGTAAAGGAAAGGAAGCACATTCAGGAGGAAATGGAACGACGTCTAGGAGCTATTCCAAGAAAGATGTATCAACTCACAGCACAAGGAAGGATTGTTGGATCATAATCAAGGACAAGGTTTACGATGTAACTCCATATGTGGAGGAGCATCCAGGTGGTGATGCCATTCTAAACAATGCTGGTGCTGATTCGACAGAGGGATTTTTCGGGCCGCAACATGGCACGAGAGTCTTCGATATCATTGACGATTTCTGCATCGGCGAATTGAAAGACTGATGATAAAGAGGAGAGGCTGTAAAAGCTCCAAATGTGAACCCATGCTTCTTCTGCAGTTTCCTGAATACGACGACAAGGAATGCAAACCTGTTCCTAATTGTGATGAAGACTGCTCCCAGGCCCCAGCTGTGTGGTTCTGATTTCATCTTTGACCTTGTGCTTATTGT 4 1 3' arm Festuca_arundinacea mirnest 100 100 -29.8 ...........(((((((((.((.(((.(((.((((.((((((.((((.....)))).))))))...))....)).))).)))..)).)))))))))..((....)) (-29.8)