mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGATTCCGTAGTCCATGAGCG TCCATGGACGCGGCGTCGAA TGCACCGTAACGAGCGCAGGGACGCCGGTGTGTCCATGGACGCGGCGTCGAACATGCAGCAGCGGTCGGCGGCCTCGATTCCGTAGTCCATGAGCGGGCGGCGCTCGAGCTCGTCATCGTGCCGC ATTCCGAATTATCGGTCTCTTTATTGTATTTCTGGGTTACTTCCACAGTTTCACTAATACCAGTACTAATATGTACAGATTTTACAAACAAACATCAAGAGGCCTGCTAAGCGGGGCCGATAACACGGGGCCCGCTACTAACTAGGAGATGCACCGTAACGAGCGCAGGGACGCCGGTGTGTCCATGGACGCGGCGTCGAACATGCAGCAGCGGTCGGCGGCCTCGATTCCGTAGTCCATGAGCGGGCGGCGCTCGAGCTCGTCATCGTGCCGCCGCGCGAACTCCGGGACCTCCAGCTCCCCCTTGTCTATGTGCGCCCACAGGTATTCGAGCCTGCTCATGTACCTCAGCTTCTCGTACAACCCGGAGCTGAAGAGGAACCGGCCGAAGGTTGCGAAGAAGAGCCGGGCCTGGATGCCGGGGTGCACGAAGTAGACGGCGCGCAGTTTCTCCTTGGCCGCGGCCGGCATGCACTCGTACGCCGCGCGGATGGCGCCCAGGCCGGGGAAGTTGTCGCCGCGGTCGACGAGGGAGTGCATGTACACCACCACGAACTCCCGCTCCCCGACCTCCGGGAGCACCCGCCTCCGCAGGGGCGCCTTCAGCGCCTCC 2 1 3' arm Triticum_aestivum mirnest 100 100 -54.9 .((((.((.((((((...(((.(((((.(.(((.(((((((((((.(((((...(((.((....))..)))...))))).)))).))))))).))).)))))))))..)))))).)).))))... (-54.9)