mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTGTTTTGTTTTTTGTTTTA ACACATAAAGAAAATAATAG GTACTTCTGTTTTATCAAAATTTTGTTTTGTTTTTTGTTTTAAAACTCGCAATCGAAATAAGATGCAACGCTATTGCATTTTATTTAGTATAAGATAACACATAAAGAAAATAATAGTTTGATAAAACAAATAAA GGCTTATCCAACAGTAATACAAATAAAATCTACTAAAATGTTCATTTTTTTTTTTGTTTGCTTTTTTTTCTACTTTTTTTCTTCAGTGTATGTAAAACATCAAAGGCACAAGTCAACGTGAAAACAAAGGAAAACTAATATAAATTTTTTTTTTATAATTAAACTCGTATCAAATGATAATAAACTCTTAATCTTCAGCGAAAAAGACTGATAGATTTTGCATGTGTCTGTACTTCTGTTTTATCAAAATTTTGTTTTGTTTTTTGTTTTAAAACTCGCAATCGAAATAAGATGCAACGCTATTGCATTTTATTTAGTATAAGATAACACATAAAGAAAATAATAGTTTGATAAAACAAATAAAAGAGTAGAAACACAACTAACCTGTGGAGGCGGTGCGCTTGAAAATTCTTTTTCAGAACCCTGATCAGGGCAGAGC 4 1 5' arm Drosophila_melanogaster mirnest 100 100 -31.8 .......((((((((((((...(((((((.(((..(((.(((....((.......(((((((((((((.....))))))))))))).......))))).))).))).)))))))...))))))))))))...... (-31.8)