mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCACAGCTTTTTGTGTTTACA TAAATATCTAAAGTTGAACT CCTCAAGAAGAAGCTGAAGTTCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAGTACTTCCAGGATCTATTGC GCACGAGGATCCCTGGCCAACCAGGAGGATGGCGCCATAAAGGACGAGCCGCCGAGCGACGACGAGCCCGCACAGCCCGCCAGAGATCGCGTCCCGCCAATTTCCCGCGGAGCAGCGCCCGCTAGCTCATCCTCCGTATCCGCGGGCCTGGGCGCAGGCGAGACTGACTTCAAGGAGCGCTACAAGAACCTCAAGAAGAAGCTGAAGTTCCTCATCTATGTAAATATCTAAAGTTGAACTTGGCCAATGGCAAGTCACAGCTTTTTGTGTTTACAGGAGAACGAGTACTTCCAGGATCTATTGCACACCAACCAGCGGCGTCTGCTGAAAGTTTCCCGGGATCGTACCTTCCTGCTGGACCGTCTGCTGGTGTACGAGAAGCCGGCCAAGGACTCTAGCGACTCGGATGCCACCGACAGCTCCGATTCGGAGCCAGCTTCTACGTCCGGCGTTGCCGGCGGATCGCAAACATCCAAGGACGCCATTCGGCGCAAGCACAAAGACAAGGGGGCACCAGGAATTCCAGGTGTGCCTCCGCACATGCCCACAGTGGGCGCCCCACGAGGTCGAAGACGAAAAATCCTAACCGGAATGTTGCCCGCGAACCATGGAATCCCAGCAATT 3 1 3' arm Drosophila_melanogaster mirnest 100 dme-mir-1008 3e-26 -28.9 ........(((..(((((((..(((.(((.(((((((((..(((((((.(((((.((...)))))))..)))))))..)))))))))..)))..))).)))).)))..)))..... (-28.9)