mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAGACAGTGCTGTGGGGAA CGTCCACAGCAGCTCTCTAAA ATTATCTGTCTTGGAGACAGTGCTGTGGGGAAATCAAAGTTGATGGAACGCCTTTCTAATGGATGGATTTCGTCCACAGCAGCTCTCTAAATTTGCTCT GTGTCAGGCTTTCTCCAGAGGAACTGCTAGGATGGGGAAGCCAATGATCGCCCCTATGCCGTAGGGGGCCTGACCAGTTTATATGGAGAACGCATGCGCAACATTAACTTGCTGTTGCCAGGCGCAGCGAAGCCAGCCGGAGTAGAGGAGACGTAGTTCATTGATGAAGACCATCATAAAGCGCTGACAGGAATTTATATTGGATAATTAATGTAAACGAAGTGCTGAAACGCAGGACCCTCGGCATGGCTGGAGATGGGTGTGAAGTCTCTGACCTTGACCAGGAGAAATATGATGCTGCTGAAAATGTCAAAATTATCTGTCTTGGAGACAGTGCTGTGGGGAAATCAAAGTTGATGGAACGCCTTTCTAATGGATGGATTTCGTCCACAGCAGCTCTCTAAATTTGCTCTGACGCTTTACTCAAGTACTCCACATGCATTCGCGGGAAAACCCTGTTCTTGCACATTTCTGGGAACACCGCTGGCCAACAAGGATTCCCTACCCTTGGCATGCCTTCCTATTCACCACCCGGGCTCATGCCCCGTATAACGCGCCTTTGAGCGGGCAACGCCCACCATCCGCCATACAACCACATCTTCACCCCAATGCGTATCCACACAGCCTAAGGGGACATAACCGTTCCCCAAGCACCCCACGCCCATTGGCTTGCAGGCCCCTCTCACCCACCCAATGCACCCACCCCCCCCACCCCCACCCACCCACGGCCCTTTTCCCTCTTTGGACCCAAGAAAACCCACACCTTGACCGGTTTTCCCACTTTGTCATACCAGCGCGGCCCCCACGCGCCCCCCAACTGGCTGGCTTTCACGCCCTCCTTCCCCCCACTACGTGATCACCACCCCCCCTCGGCCCGGCTCACCCCTCCCCACCCCGCCCAACTTGCCTCACACACAGTTCTTCTCTGTCGACGCACAAATTGCCCGCACCCG 2 2 5' arm Xenopus_laevis mirnest 100 100 -30.6 ..........(((((((...(((((((((((((((....(((.(((((.....))))).)))...)))))).)))))))))..)))))))......... (-30.6)