mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTGGGGTGGGGGAGGGGGA GGCCTCCCCCAACTCCGGGGGC CAATGGGACCTTTTTGGGGTGGGGGAGGGGGAAGGCCTCCCCCAACTCCGGGGGCGGGCTTTT CCCGGGGACCTTTGTCTCCGCGAGCGACGTAGCTTCCGGCGGGACACAGTAAGGGAAGGCAAAAGTGTGTAGGCAAACTTTTATAAAATATGTCTCTGGCGGATGAATTGTTAGCTGACCTTGAGGAGGCAGCAGAAGAAGAGGAGGAGAACTTAATCGACGAAGATGATTTGGAGACCATTGAAGAGGTAGAGGAGGAGATGCAAGTGGACCTAAATGCGGAATCGGTAAAAAGCATAGCCAAGCTATCGGATAGTAAATTGTTTTCAGAAATTCTTTTGAAGATTGATGGATACATCANANAACAACCAAAGGCTTCTGAAGTAATGGGCCCCGTTGAAGCTGCTCCAGAGTACAAAGTTATAGTTGATGCTAAACATCTGACTGTGGAGATTGAAATGAACTAAATATCATTCACAATTTTATTCGGACAAAATATTCCAGAGGGTTCCTGAGCTGGAGTCTNTAGTTCCAAATGCTTTGGATTTATTAAGGGACGGTTAGGAGCTAGGGGACAACCTGGGATAATGCCAAATAATGGGGAATCCTCTGCAATTTCTGACCAATGGGACCTTTTTGGGGTGGGGGAGGGGGAAGGCCTCCCCCAACTCCGGGGGCGGGCTTTTTTCCGGTGGAAAAAATTTGGACACCAATTTTAAAAAACCTGGGGGATTTGGGGGCCTAAAAATTTTTACCCATCCCACAAACCCGAAATTTTTTGAGAATTTGTGGGGAAAACCCCCCCGGGGGTTTTTTTTTTTGGCCCCCCAAATTCTCCAAAAAAAATGGTTTGGGGGGGGGGCCCCTCCCCTTGGGGGGGGGGCAAAAAAAAATTGGGGGG 4 1 5' arm Xenopus_laevis mirnest 100 100 -27.9 ....(((.((((((((((((((((((((.......)))))))).)))))))))..)))))).. (-27.9)