mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGTGTGAGGAGGGAGAGACTT TTCTGCTGCCCTTCTCATCCGAG ACTTTTGGCCATGTGTGAGGAGGGAGAGACTTACTGTCCTGAAGTAAAGGATGCAAAACAAGGCAAAAGCCTTGGAAAAATATGTATGAAATGCAAGGAAAGTTCTGCTGCCCTTCTCATCCGAGCTGGAGAT GGTTTGCACGTTAGGAAAAGTACTTTTGGCCATGTGTGAGGAGGGAGAGACTTACTGTCCTGAAGTAAAGGATGCAAAACAAGGCAAAAGCCTTGGAAAAATATGTATGAAATGCAAGGAAAGTTCTGCTGCCCTTCTCATCCGAGCTGGAGATGCATTCTGCAAATCCTGCTTCAAAGAGTACTTTGTGCACAAGTTCCGGGCCACTCTTGGCAAGAACAGAGTCATCTATCCAGGGGAAAAGGTTCTCTTGGCTTATTCCGGTGGTCCCTCCTCCAGTGCCATGGTCCGGCAAGTTCAGGAGGGACTGAGTCGTGATGCCCCTAAAAAGTTGCGCTTTGTTCCTGGAATCCTTTTTATTGATGAAGGCACAGCATGTGGCATGAGTTGGGAGGAACGTCAACAAATTCTGTCTGAGATTTGCAGTGTCCTTCAACAGACAAAGATTCCCTTTCACATTGTCTCTTTGGAGCAGGTTTTTTCCTTGCCAGGCTCTGTCCTGCAGAGAGGTGCGCCTGAACAGAGACCAAATTACAAGGAAGAAGTGGATCGTTTCTTGGTGCAGGAGCGGGAGCAAGGAGATGCAGGTTGTTCAGAAATGCTAGAAAGGCTTGAGGTCACTGACTCAGATTCACCTGGAAGTAGTGATAAAATGTACCAAAGTACATGCAGCCGTCCTCCTGATATGCACACCCAGAAACTAAAACAACTCTTTGCTTCTGCCAGACATTGACTGCTAACAGCAGTTCTTCATACTCTGAGGAGCCACCTATCTGCTATCGCGCGAACTT 4 2 5' arm Xenopus_laevis mirnest 100 100 -37.9 ..(((((((..((.(((((((((((((((...(((.((((...(((....(((((...((((((....))))))........)))))....))).)))).)))))).)).)))))))))).)).))))))).. (-37.9)