mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCTGGTGTTGTGAATGGGGA TCCATTTTGGGACATCAGCTTA CTACGACTATAGATCCATTTTGGGACATCAGCTTAGATCTGCCAGGCTCTTCAACTCCATTCTGGCCTCTTAGCCCAGGAAGTGATGCTGGTGTTGTGAATGGGGAGAGTCATGTG AGGCTGGACCGGCCGGATTCTCGGATAAAAGATTCACGTGGGAGCCAACAAAGCGGGAACTAGAGCTGTTACAGCATAACCCCAAGAGAAGAAAAATTACCACAAATTGTACTATAGGTTTGCGAGGTTTAATTAATCTTGGGGAACACATGTTTTATGAACTGTATTGTCCAGGCACTTACCCACACTCCCTTGCTACGAGATTTCTTCCTTTCGGACAGACATAAATGTGAAATGCAAAGCCCCAACTCTTGCCTTGTTTGTGAAATGTCTACGCTCTTTCAGGAGTTTTACTCCGGACACCGTTCTCCTCACATTCCATATAGGTTACTCCACCTTGTATGGACACACGCACGACATTTAGCAGGGTACGAGCAGCAAGATGCACACGAGTTTCTCATTGCTGCTTTAGATGTTCTGCACAGACATTGCAAAGGTGATGATAATGGGAAAAAGGCCAACAATCCAAACCACTGTAACTGTATCATAGACCAAATCTTCACAGGAGGCCTACAGTCAGATGTAACTTGTCAAGTGTGCCATGGGGTCTCTACGACTATAGATCCATTTTGGGACATCAGCTTAGATCTGCCAGGCTCTTCAACTCCATTCTGGCCTCTTAGCCCAGGAAGTGATGCTGGTGTTGTGAATGGGGAGAGTCATGTGTCAGGAACAACAACGCTCACAGACTGCCTCCGGAGGTTTACACGACCAGAGCATCTAGGAAGTAGTGCCAAAATTAAATGCAGTGGTTGCCATAGCTACCAGGAATCTACTAAACAGCTGACTATGAAGAAATTGCCTATTGTGGCTTGTTTTCATCTCAAACGATTTGAGCATTCGGCTAAACTGAGGCGGAAGATTACAACATATGTGTCATTCCCTTTGGAGCTGGACATGACGCCATTTATGGCCTCCAGTAAAGAAAGCCGAATGAATGGACAGTATCAGCAACCATCTGATAGTTTACACAATGACAATAAGTATTCCTTGTTTGCAGTAGTTAATCACCAGGGAACCTTGGAGAGTGGGCATTACACAAGCTTCATCAGGCAACACAAGGACCAGTGGTTCAAATGTGATGATGCGATTATTACCAAGGCTAGCATTAAAGATGTTCTAGATAGTGAAGGGTATTTGCTTTTCTATCACAAGCAGTTTCTGGAGTATGAGTAACTTTTATCAGAGTTTTTCTGAATTACCTGTATAGAATGATATCAAACAAGAAGCCTTCTGCTATGACACAAATCTACCTGAAATGTACACACAAACCAGATTTACACAGAAGCAATGTTGCCATCACACTTGCAATGCTGGCTCTAGAACTGATGGAGCCACTATTAAGGAAACTGGGAGCTGCAGAGGTGTGGAGGGATACTCAGAAACTCTGGCACTAAACATCCTTCATTGTGGTTTCTGGGGATCTTGTGGTGGGAAAGGCTTGGGAGGGGGGGAAGATCACAC 5 1 3' arm Xenopus_laevis mirnest 100 100 -31.6 ....((((.....(((((((...(((((((((..(((.((....)).)))(((..(((.....(((......)))..)))..))).)))))))))..)))))))...))))..... (-31.6)