mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACATATTTCTTTACATTTCA ATGAGAAAAAATGTGTTTA AGTAACAAAGTAATGAGAAAAAATGTGTTTAATTTTACATATTTCTTTACATTTCACAGAAGAAA ACTTCCTTCACACAGGAACAGCACATATATGAAGAAACAAAAATAAGTCACAATCTGTGAGTATACATCCTTGTAATTTACTTTTCACAATACAGGTTTTTTTTCTGAAATGTTTTTGAATGAATTTATTGCAACCATAACACCTTTTGGAGTTGCCAACATTATTTACAAGAGCAGAACGAACACATGTAATGCAAGTGACTGAATATTTCAAAAGGAAACAAATAAATCATATACTGAAAATTTTGTTGATTTAATACTTTTGATCTTAGGTTACTATCATTTGATGCATCTGTTATGGAAATACTCAAAATTAAAAGTAAGTAACAAAGTAATGAGAAAAAATGTGTTTAATTTTACATATTTCTTTACATTTCACAGAAGAAATAAGAGGCAGGGATAGGCTCCAGCAGCCCCATGACCCCNAAAGGGACAAAATGGGTTCAGAAGATGAATAANAAATAAGAAATAAATTCAAATTAAAAGGAAAAGGTATATCAGTTATCTGCAGGTATTCTCAGACATGTACTATCGCACATATNANTNAGAAAAAAACAACAACATAAATTAAAAATCGAGATCACTTGATAGCAGCGATNGCACCCAACAAAAAAGTTAGAACAGAAG 5 0 3' arm Oryzias_latipes mirnest 100 100 -8.7 .........((((((.(((.((((((((........)))))))).))).))))..))........ (-8.7)