mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GATGCTGCTGCTGATGGATGG CCCGCAGCAGCAGCAGCGC GGGAAAACGATGATGCTGCTGCTGATGGATGGTGGAACGTGAAAAGAAGGAGGGAGAGTGCCCAGCCATCCCCACCCCAAGACCCCCGCAGCAGCAGCAGCGCTAGCCGGA TGATCAACGCGAAAACAAGAGAACTTTATGCCAAAGAGACTTTATCCATCAGGAGCTGAAAAAAGATGAAGAATTTAAACATCAGTCACAAGTTTCTTCCCAGCCAACAGTTTCTTCTGCTCTCAAAAAGTATTGGAGGTGGTGCAGCGTCCACATCCCAAGATGTTCCTGACATCACTGAAGATGTCATCTCAGCTGCAGAAGAAACTCCAGTCACCACATCTTCTGTTGAAAGGGAAAACGATGATGCTGCTGCTGATGGATGGTGGAACGTGAAAAGAAGGAGGGAGAGTGCCCAGCCATCCCCACCCCAAGACCCCCGCAGCAGCAGCAGCGCTAGCCGGAATCCCCCCAACGCCACACGGGAACCGGCAGGGAACAACCGCCGCCCGGGCGACCAAGCCCGCCACCCAGGCCAGGGCCAGCAGGGCCGCCGCAAGGCCCCCAGAGCCAGAGGCCAGGGACGCACGGAGGGAAAGAGAGCGCCGCCCCAGCCCAACCAGGAGAGCAGCCCCCCCGCCGCGCCGGGAGAACCCAACGCAGGGCCCCACCGGAGAAGGACGCCCACAGCCCCAAACGAGCACCCCACCACCACCCAGGAGTTCCGGGC 3 2 5' arm Oryzias_latipes mirnest 100 100 -34.7 .((....((....(((((((((((.(((..(((((...(((....((.((.(((......)))..)).))..))).))...))).)))))))))))))).))....))... (-34.7)