mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTCAGGCTGGAAGTAGGAGTG CATCTAGTCCAGTATGCTCA AAAAAATGGAATTCAGGCTGGAAGTAGGAGTGAAACTGGCGCCGAAGGGACTCACGCAGACAAGCTGTTGACCTTCAAGCATCAGCCACATCTAGTCCAGTATGCTCAGTCCAGTG GGGAGGGTCATCAATAAAAAAGGTGCAGCATGTCCGTCATGTTAAGCAGTTCAGCTCTGCTTTCAAGACTCTTTGTCTCGGTGCTGATCCATGCAGCTGCCATGTCGTTTATCACAACCTCACAGGCTGCACGAGCTAGTTCCACTCAACTCTTAAGCCATGATGAAGTGGAGCACAGTGTGGCGAGGCATTTGAACCGCCCCAACGGCCTTTATCGTTTCCTGCCGACTGGTCTGCCGTCCCCAAAAAATGGAATTCAGGCTGGAAGTAGGAGTGAAACTGGCGCCGAAGGGACTCACGCAGACAAGCTGTTGACCTTCAAGCATCAGCCACATCTAGTCCAGTATGCTCAGTCCAGTGGCTACGGTCCTTACAGCAAAAATGTCAGGGATAAAGGACAGCAAGAAGTCAGGACGACCCAAACGAGGACAAGTGGAATGAGGTCCGCAAGCAGCGGTTTCACTAGTCGCTCTCTGCTCGGAGGACAAAGCTTTGAGAGGGCAAAAGAGGAGGATCAAATGCTTCCTCCTGCAAAAACCCACACTAGAAACCCCAACAGTTCATACTTTGTGGTCAAAAGAGTGTCCCTTCTCAACAAAACTCTAAGTTTTCCTCAAACTGGGAAATACAAACCAAGCAAAGACGGAGGCCTCAAAAGTGACACTTCAAATGTGAATGAGGGTCCTTCCTTTCACCCTCTTCTTTCCCCACCTCCCACTCATGA 5 1 5' arm Oryzias_latipes mirnest 100 100 -32.9 ......((((...((.((((((..((((.(((...((((.((.(((((...(((.((((.....))))))))))))..)).)))).))).)))).)))))).)).....))))... (-32.9)