mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCTTCCCCTTGTCTCCTCT GGGGGATGAGTGGAAGACGGC AAAACAGGTACCCTCTTCCCCTTGTCTCCTCTGCCTTTGACATTCTGCAGGGTGCTAAAATATTCACAAAACTTGACCTGCGGAATGCCTATCACCTGATCAGAATACGGGAGGGGGATGAGTGGAAGACGGCCTTCAACA GCCAACTGCCCTATCAGGGGAGCTGTTTCCACCAACACCTCCTCCGTCATGAGACGGTGATTGCGCCATTGACCTCCTCCCAGGGGCACCCATTCCTAAAGGCCGGCTGTTCTCCCTGTCAATCCCTGAGCGTCTTGCCATGGAAGAATACATCAAGACCTCGCTACGGGCGGGGCAGATCCGGCCGTCCTCTTCCCCTGCTGGTGCAGGATTCTTTTTTGTTGAGAAAAAGGACAAGACCCTGAGACCTTGTATAGATTACACTCAACTAAATGACATAACCATCAAAAACAGGTACCCTCTTCCCCTTGTCTCCTCTGCCTTTGACATTCTGCAGGGTGCTAAAATATTCACAAAACTTGACCTGCGGAATGCCTATCACCTGATCAGAATACGGGAGGGGGATGAGTGGAAGACGGCCTTCAACACCCCCATCGGACATTATGAGTACCTGGTCATGCCGTTTGGCCTCACAAATGCCCCCGCCGTATTTCAATCTCTAGTGAATGATGTTCTCCGGGATCTGTTAAATAAAAAGGTTTTTGTGTAAAAAAAAAA 5 0 5' arm Oryzias_latipes mirnest 100 100 -40.6 .....((((....((((((.((((((((((...(((.((.(((((((((((.........................))))))))))).(((((....))).))..)).))).)))))))))).))))))..))))...... (-40.6)