mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CAATCAGCAAGTATACTGCCG GCAGTGTCTTAGCTGGTTGTT GGTGTTTCTCTGGCAGTGTCTTAGCTGGTTGTTGTGAGGAGTGAGAACGAAGCAATCAGCAAGTATACTGCCGCAGAAATTC TTCGGCACGAGGGCACATCACCAGCGATCAAGAGGCTCAGAGTGAGTGCAGAGAAGTTTTCCTCATCTCTGTCCTGTGTGTGATGCGCCGCAAGATTCGTCCAGGAGGCACTGGGTCCAGCTGCTGGTGGCGTGTGGGAACATGCCTTGACTTGTTGTGGTGCAACACAGAAGGCAGAGAAAGACTGAGAAGGAGAACAAGCTGGTGGTCAAGCCCGGTGTGAAGTGACCCGTGCCCTGGGAAAGCCCTGCAGCCCCTGGCACAGACAGCAGTTACACGTGGTGGAGGTGAGGGGCAATAGAGGAGCGCCGCTGCAGCCTGATCATCTATATTAGAAAAACACCACTCCTCCACAAAGCTGGGCAGGAGAAGCACGGCTGCATTCTGAGATGGAAAGATGGGAACGTGCAGCAAAGTCAAGCAAGGATCCTGGAGGAGATAGGAGGACAGACGGCTGGTTTGTTGGACGCGGCTGCTGTGGGTGTTTCTCTGGCAGTGTCTTAGCTGGTTGTTGTGAGGAGTGAGAACGAAGCAATCAGCAAGTATACTGCCGCAGAAATTCTTCGCAATATGAAGCCTTGGGATCACGGCCAACGTGGGGAGAAAAGGAAACATAGGGAGAATGCACTTATGCTGAAAAT 0 2 3' arm Oryzias_latipes mirnest mir-34 3e-38 dre-mir-34 3e-34 -33.6 ...((((((.((((((((((((.((((((((((.......((....))..))))))))))))).))))))))).)))))).. (-33.6)