mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGATATCATCTTATACTGTAA ACAGTATAGATGATGTACTA TGAGCCCTGGACAGGATATCATCTTATACTGTAAGTTTAATAAAGAGACACTACAGTATAGATGATGTACTATCCAGGGTTT CCAGTGAGTTATTGAAAGGCTTTAATTTGACTTACACAAAACATGAAGACGTGAGAGACACAGACCAACATAAACTTTTTAGTCAAAAGGAGGTGGCAGCGAGGTTACCGCCACCTCTGGGTGTAGCAAAGGGCGTAGGCCAACTCTGGACTGAAGCAATCTGGGTGCGAGCAAATAAAAAGTCCTGTCTGCTCCGGCACAGATGTCATCACGTATGCAAATGAACCCAAGGGGGGCTTTAAAGTGTGGCAAATAGGAAACCTGGAGCAAACGCCTTCGAGGAGCGCGAGCTGGAGCGTGCAGAGGGGAGCCACAGGTCCAGCGAGACCCCCCCCTTCGACGACACCGACCAGCTGAAGGCGTTTCGGGTGCCGCCTCACGGCTCCATCTTGAGCCCTGGACAGGATATCATCTTATACTGTAAGTTTAATAAAGAGACACTACAGTATAGATGATGTACTATCCAGGGTTTCATTCCACCTTTGCTGAGTCAAACCGCCTCCGCTGGACCAACACAGAGCGGGGCCGTCAAACCGTTACCATTACTGAGTTTAGTAATGGTAAGGGTTCCACGGCCTTTGCTCAAAGGCATCGGAACCAGCAGGAA 2 1 5' arm Oryzias_latipes mirnest mir-144 4e-40 tni-mir-144 3e-34 -35.8 .((((((((((.((.(((((((((.((((((((.((((.......))))..))))))))))))))))).)).)))))))))) (-35.8)