mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACAGTATAGATGATGTACTA GGATATCATCTTATACTGTAAG GAGCCCTGGACAGGATATCATCTTATACTGTAAGTTTAATAAAGAGACACTACAGTATAGATGATGTACTATCCAGGGTT CCAGTGAGTTATTGAAAGGCTTTAATTTGACTTACACAAAACATGAAGACGTGAGAGACACAGACCAACATAAACTTTTTAGTCAAAAGGAGGTGGCAGCGAGGTTACCGCCACCTCTGGGTGTAGCAAAGGGCGTAGGCCAACTCTGGACTGAAGCAATCTGGGTGCGAGCAAATAAAAAGTCCTGTCTGCTCCGGCACAGATGTCATCACGTATGCAAATGAACCCAAGGGGGGCTTTAAAGTGTGGCAAATAGGAAACCTGGAGCAAACGCCTTCGAGGAGCGCGAGCTGGAGCGTGCAGAGGGGAGCCACAGGTCCAGCGAGACCCCCCCCTTCGACGACACCGACCAGCTGAAGGCGTTTCGGGTGCCGCCTCACGGCTCCATCTTGAGCCCTGGACAGGATATCATCTTATACTGTAAGTTTAATAAAGAGACACTACAGTATAGATGATGTACTATCCAGGGTTTCATTCCACCTTTGCTGAGTCAAACCGCCTCCGCTGGACCAACACAGAGCGGGGCCGTCAAACCGTTACCATTACTGAGTTTAGTAATGGTAAGGGTTCCACGGCCTTTGCTCAAAGGCATCGGAACCAGCAGGAA 2 1 3' arm Oryzias_latipes mirnest mir-144 6e-39 tni-mir-144 3e-34 -34.9 .(((((((((.((.(((((((((.((((((((.((((.......))))..))))))))))))))))).)).))))))))) (-34.9)