mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTGGTCAAACGGAACCAAGT TTGGTCCCCTTCAACCAGCTA GAAGCAACTCGCCTTGCTGTGGCTGGTCAAACGGAACCAAGTCAGGTGTTTCAGAGAGGTTTGGTCCCCTTCAACCAGCTACTGCGTCGTGAATCATAT GCCTGGATGTGGTAGTCCTGCAGGGTTTGACAGCCTGCAAGCTACTGAGGACTGTCTTCTGTCTTTATTTCCTTATTTTCTCTTCCTTATTTTCCTCCATTTATCCATCCAACTCTGGTTCTCTTCTTCTCTCTTGCTTTGCCTCTTGCAGCTGAAGCAACTCGCCTTGCTGTGGCTGGTCAAACGGAACCAAGTCAGGTGTTTCAGAGAGGTTTGGTCCCCTTCAACCAGCTACTGCGTCGTGAATCATATCAGCGCAGGATCAAATAGACAGTAGTGGCTCCCTCGACTGAGGTTATAGGCTACAGTCATTAAACTGAAACCATGTATGGTTTATCTTTCATTTCCTAGAGTTGTATTGTTTTTCTTTTGGTTTACGGGTTCCTAAAAGGAAAAATAAAAATTGTAAGAAAAAATACAAAGAAAAAAAAAA 4 0 5' arm Oryzias_latipes mirnest mir-133 3e-44 dre-mir-133b 4e-34 -29.2 ........((((..(((.(((((((((..((.((.((((((((..............)))))))).)).))..))))))))).)))..))))....... (-29.2)