mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTTTGGTTATCTAGCTGTAT AAAGCTAGATAACCGAAAGTA GCCTGAGGGGTTGTCTGTTATCTTTGGTTATCTAGCTGTATGAGTGCCGTATTTTCTTCATAAAGCTAGATAACCGAAAGTAACAAGAATCCCATTACA CAGGGATGGAGACAGCAGTCCAGCAGTACCTCCCCGGTTCCGGTCGGGGAGGACCGCGACTGTGGACGTGGAAGACCTACCAGGATCCAGAATGACGGTCCAAAGCCGGATCCGTCGCTTTTGGACGCACGCGCTCTTTTGGCTCCAGAGCCGCGCATCCGGAAGGATGTCTGCGCCCGGGATCTGACCCAAACCAAGGACTCTGGATTCTGGAGAACAAGCTGTGCACTTGTCAGAGGAGCGGTCAGCCGCCTGAGGGGTTGTCTGTTATCTTTGGTTATCTAGCTGTATGAGTGCCGTATTTTCTTCATAAAGCTAGATAACCGAAAGTAACAAGAATCCCATTACATGTCAGAGCGGATGGTGAGGAAGAGGAGGGACCTTCAAACCGGACCGCAGGTGTCTCCAGGTGTCTCCAGGTGTCTCCAGGTGTCTCCAGGTGTGCAGGTTATGAATCTGATGGAAGCTGAAAGTCACCTGAGCCGTTCAACACAAGCTGATGTGGAGCGTCCAGCCAGCAATCTGAGAGCTTCTCTGCAGCCGTTCTGGAAACATCTGCAGGGCACCGAGGGTCAAGCCTGAGACCGTCCATCCCTGAGCAGGAAGCCTTGTGGGAAAATGGAGCCATGGACAATCAATTAGCTCTTTCTTCTGTTTTTCAATGTGATTTTCTCTGAAATATTTGAGTTTTTAGGACATTTCTCTTCAGTGAAGACTAAATCTTTCAATCACT 2 0 5' arm Oryzias_latipes mirnest mir-9 5e-28 tni-mir-9-1 3e-38 -37.6 ......((((((...((((((.(((((((((((((((.((((((............)))))).))))))))))))))).))))))..))))))...... (-37.6)