mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTGTGCGGAAATGCTTCTGC AGAATCCTTTCTGCACAAAC CATGGCCCCCTCATCAGTCTAACAGAATCCTTTCTGCACAAACTAGGATGTTTTTACGGTCAGTGTGCGGAAATGCTTCTGCTTAACTGGTGGGGTTTCACC CCTACATTTCAAACAGCAACGTTTTTACATAGTGGATGCTACACCTTAAATAAAAAAATATCCATCTTCAGGTGTTTGAAAACTCTGCAAAGATGTCTGGCTTTTTCCAGATGTTGAAGAAAAGAAAGGAGCCTGATCCCTCTCATAGGATTCATGGCTTTTGCTGCAACAGGTGCCACAACTGCTTCTCTCTACTTTTTATTTACTAAACCGGATGTTATTCTAAACAAGTCATCCAACCCGGAACCATGGGAAAGATTGGATCCATCCAAACCCCAAAAGCTTATCACCATCAATCAGGAGTGGAAACCTGTGAAGGAGCTGGAGATAGTGAGGTCCCTCACCAAGTAAAAAGAAAAAAAAGAAAAGGAAGAAGAAAAGGGTTAAAGATGCAGAATCCAACTCCATGGCCCCCTCATCAGTCTAACAGAATCCTTTCTGCACAAACTAGGATGTTTTTACGGTCAGTGTGCGGAAATGCTTCTGCTTAACTGGTGGGGTTTCACCCTGCTCATT 5 0 3' arm Oryzias_latipes mirnest mir-147 1e-34 gga-mir-147-1 0.000001 -31.4 ..(((...((((((((((.((((((((...((((((((((.(((.............)))...))))))))))...))))).)))))))))))))..))).. (-31.4)