mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTAGCAGCGGCAGCAGGGTTC ATCCTTTTGTGGCTGCTATGG ATCCAAACTGGCATCCTTTTGTGGCTGCTATGGTGAACGGAAAAGAGTCGGAAGTGATCAGGGAGGATGACAAGAAGCTCCAGGAACTGAAAGAGGAGTACGGTGAGGAAGCCTATACTGCAGTGACAATGGCGCTGACCGAGCTCAATGAGCACAGTAGCAGCGGCAGCAGGGTTCCTTTCCCCG ACAGGGGAGCTGCGTGATAAGATCGAGGAGATGGATTATACAGAAAACTACAACCAAGATCTAATCGTACAAGAAAAAAAGACTGCTGTTGAGTTGCAAGAAGCTCGGAAACTGGCGATAGATGCAATACAGCGTTTTCCTGGCCAGACCAGTGACCAAGCACACATAGGCATCAAGATGATTGGTCAGCTTGACTTGAAAGCATTTTCAAATGTGTGCAGGCAAAAATTTCCAAAATATGATGCCGAAGTTGAAAGTGTTAAGCTTTGTTCAAAGTGGCAGAATGAAATTAGCAATCCAAACTGGCATCCTTTTGTGGCTGCTATGGTGAACGGAAAAGAGTCGGAAGTGATCAGGGAGGATGACAAGAAGCTCCAGGAACTGAAAGAGGAGTACGGTGAGGAAGCCTATACTGCAGTGACAATGGCGCTGACCGAGCTCAATGAGCACAGTAGCAGCGGCAGCAGGGTTCCTTTCCCCGAGATGTGGAACTACAAGGAGGGGAGGAAAGCGAAAACAAAGGAAATTGTCCAGCATGTCATCAAGCTGGCCAAGGCGAGCAAAAAGGGGCGTTGAGTAGCTCAGCACTATATGGCTCCCCTATCGTTGAACCGAAGATAGAACCCTATATATGTTTGATTATGTATTAAGCAACTAAGTGGAGTGGAAACGTAACCCGATGCATTTTGGTGGAACTACCTATTTCTATCTGCAGTAAGTAAAGTCGGAAGCAGCTACATTGTCCATGGCTGGACAGTCTGCTGTTCTTCTTTTAGTGTCATATATGGGATGCCACTTAACTGCTTATGTATTGATTCAACATACTATCTGGTGGATTATGATGTC 3 0 3' arm Festuca_pratensis mirnest 100 100 -49.6 .........((.(((((.((((.((((((((.(((..((.....(((((((..((.(((......))).))....(((.(((...((((.....((.(((.(((......)))))).)).)))).....))).)))..)))).)))..))..))).)))))))).)))).))))).))........ (-49.6)