mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATGAAGTGTGATGTGGATAT ATCCATGANACTACCTTCAACT GGAGTCCTGTGGTATCCATGANACTACCTTCAACTCCATCATGAAGTGTGATGTGGATATCCGTAACGAT CCAAAGCCAACAGAGAGAAGATGACACAGATCATGTTTGAGACCTTCAACACCCCAGCCATGTATGTAGCCATCCAGGCTGTGCTGTCCCTGTATGCCTCTGGTCGTACCACTGGTATTGTGATGGACTCTGGTGATGGTGTTACCCACACTGTGCCCATCTATGAAGGCTACGCCCTCCCCCATGCCATCCTCCGTCTGGATCTGGCTGGCCGTGACCTGACGGACTACCTCATGAAGATCCTGACAGAGAGAGGCTACAGCTTCACCACCACAGCCGAGAGAGAAATTGTGCGTGACATCAAGGAGAAGCTGTGCTACGTCGCACTGGATTTCGAGCAGGAGATGGCCACAGCTGCCTCTAGCTCTTCCCTGGAGAAGAGCTATGAACTCCCTGATGGTCAGGTCATCACCATTGGCAATGAGAGGTTCAGGTGCCCCGAGGCCCTCTTCCAGCCATCTTTCTTGGGTATGGAGTCCTGTGGTATCCATGANACTACCTTCAACTCCATCATGAAGTGTGATGTGGATATCCGTAACGATCTGTATGCCAACACAGTGCTGTCTGGTGGTACACANTGTACCCTGGCATTGCTGACANGATGCAGAACGAGATCACAGCCTGGCACCTAGCACAATGAANATCAAGATTATTGCGCC 4 2 3' arm Gallus_gallus mirnest 100 gga-mir-3533 4e-30 -17.3 ...((..((.((((((((((..((...(((((.........))))).))..))))))))))))..))... (-17.3)