mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGGTGAGGAGGGACCTCTGA AGAGCTCTCCTTCTCCCCTTT AGGAAGCTGCCTGGGTGAGGAGGGACCTCTGACAGAGCTCTCCTTCTCCCCTTTGCTCACTG GCGGCTCGAGGTGCACNAGAAGGGCTACGCTGTTATGCCAAATTCCACCGGAACCGAAGAGTGACCCGAAGGAAAGGGCGCTGTGTGGAGCCTGAGTCGGCCAATGGAGAGCAGGGATCATTCATTAATGTTTAGGAGGGTGGGACTTTATCTCCTGCCTGGATGGTCAGTAGCTGGAGTCAAACCACCTACACCTAGCAGTGAGGATTAGAGAAGAAGTCAAGCAAATGATTGAAGCTGCAGGCCAGGCTCCAACAAAACTGAGGCTGGTGTTAACTCTACAGTGGTCTCAGCCTTTTCCATACCAGGACTGTGTTCCTCCTCCCTTCCCTCAGCACGTTCCTGTCCTTGATCTGGGTCCCCCTCTCCCAGTTAGTTGGAGATGATTGTGATTGCCAGTCTGGTGGCAAGATATGAAAGATCCTTCAGGTCAAGAGGGATAGGAGCTTAAGCTTTCCCTCTCAACAGTTGCTTGAGAAGAAAGGCAGACACTCCTTAAGGATCAGAGGTTCTTAGAGAATGGAAGCTTGTGGGGAGACAAAGGAGGGAGGCAAAGATGATAGCAGGAAGCTGCCTGGGTGAGGAGGGACCTCTGACAGAGCTCTCCTTCTCCCCTTTGCTCACTGGTACAGACTGATATTCCCCAGCAGGTTACACACTACCACTTCCTACCTGTCTTCTTTGAGAGTATTCACTCCCACTCCTTCCCTTCTCTCTTGCTCCCATAGAATGGACCTGGTTTCTTGCAGGGATGGTGGCAAGGTATTCCCTGGCTGGAGCTTCTCTCGTTAGATATCCTGCCAAGGCCTGTATTTTAATGATATTTTAAAGGAGCTTTAAGGGAAGGGAGTAGTTTCTAGTGAGCAAAAACAGGTTTGGGACCAGGGATAGGGG 4 2 5' arm Gallus_gallus mirnest 100 100 -22.7 ((..(((.....(((.(((((((((.((((...)))).)).))))))))))...)))..)). (-22.7)