mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGTCATGTGGCAGTTTCAGG TGTGCTGTACCTGAACACT TGCCAGGATGCATGTGCTGTACCTGAACACTTGCCTTCTTCGATGAGCTGACGTAAGGTCAGTGGTCATGTGGCAGTTTCAGGCATTTGGAT TATAACTTCTGGATAGCATGGATATGGAAATGAGCATTTATCTCGAATAGAGAAAGACTGCGTGGAGATTGATATCAAGTATGAAGGTTTCATAGCACGACAGCAGAGTCAATTACAACAGATTATAAACCAGGAACACAGGAAACTTCCTGACGACTTAGATTACCACTCAATGTCAAATCTATCGCTTGAAGCTCGTGAGAAACTTTCAAAGGTAAGGCCACAAACCCTAGGCCAGGCGGGCAGAATCGGCGGTGTGAGCCCAGCCGACATGACGGTTCTTCTCATTTCGATGGAGAGCACCCGCCGCATGGCTGAGTACAGGCGAAAGCAAGACGTGCTGAGCTCCGCCGCCGTCAAGGCAGATGATTCTTCAGACGAAGTGGTCCATATCAGTGCCACCACCGCGTAACCGCATGCTCTCCTGTGACTACTACGGGCAACCGAATCGGGACCCTTGAGAAGTTGAGATCTGCGTGGCAGCGGAATAGAATCTCTCTGGACAATGCAGGCATAGCTGGAGTGCAGAAGAATTGTTCAGGAGATGCCAGGATGCATGTGCTGTACCTGAACACTTGCCTTCTTCGATGAGCTGACGTAAGGTCAGTGGTCATGTGGCAGTTTCAGGCATTTGGATGATGAAGCTTAATTGGAAA 4 2 3' arm Festuca_pratensis mirnest 100 100 -27.7 ..((((.((((.((.(((((((.(((.((((.(((((...((.(.....).)).))))).)))).))).)).)))))..)).)))))))).. (-27.7)