mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCACACATCTGGTGGTGTCA ACATCAAAGATGTGAGCAAC CACCACACAGCTGCACACATCTGGTGGTGTCAGCAAGCCCATCACGTGCCACAACATCAAAGATGTGAGCAACAGCGGAGC GCGGTCCCAGCAGCACCCAGCGTTACGGGGAGCCCCGAGCAGGAATGCCGTGCTGGGGAAGTGTGCACATGATGAAGTGGAGGCAGCTTTTCTGGATCGTGTTCTGCACAGTGAGGTTGGCTGGTACCGCTGCTGACAGCCCCACAGACATCTCAACTGCTGTGTCCTTGGCCGTGGCGACAGCACAGAGCAGCACTGGCAGTGAGGCACCCACCAGCACCATGGGTTCCAGCACTACACCGATGCAGGACAGCCCCGCCACTGCTCAACCCTCATCAGTCAGCCCCATCTCCCCGGGACTCAGCAGTGGGCACAGCCCCCGGTCCAGCGCCCATCCCAGCGTCCATCCCAGCACCCATCCCAGCACCCATCCCAGCACCCATCCCAGCGCCCAGACCAGCATTCAGACCAGCCAGACCCCCACACCACTGCTGGGCAGCCACTCGCATCCAGAGAACACAAGCAGTTGGGCAACCACCACACCGAGCCCAACACTGCACCCCGGAACGACGGCAGCTGTGCACCCATCTGCAACAACACTGCTCAGCTCCACGGCCACCCCCAGNCTGACGGTGGTCTCGNNNNNCACCACACAGCTGCACACATCTGGTGGTGTCAGCAAGCCCATCACGTGCCACAACATCAAAGATGTGAGCAACAGCGGAGCCCTCTGCCTG 4 1 5' arm Gallus_gallus mirnest 100 100 -21.6 .........(((((.(((((((..((((((..(((...........)))....)))))).))))))).)))...))..... (-21.6)