mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTTGTTTGGGTTTTTTTTT AAAGAAATCCACACAATGAAA GCTTTGCTGAAAAAAGAAATCCACACAATGAAAAATTTTTATATCTATCGTACTATGAGGAACCTATCAGGGTTTTTTGTTTGTTTTTTGTTTGGGTTTTTTTTTTTCCTCCTC GACGCCGGCAGCGAGCGCAGCAAGGCGCCCAGCCTGCCGCCGCGCTGCCCCTGCGGCTTCTCCCCGGTCCAGCAAGACTATGAATCTCTGTTCCAAATGCTTTGCTGAAAAAAGAAATCCACACAATGAAAAATTTTTATATCTATCGTACTATGAGGAACCTATCAGGGTTTTTTGTTTGTTTTTTGTTTGGGTTTTTTTTTTTCCTCCTCAGTTAAATTATGATCACACTTTAAAGCCAACTCCATCCCAGAGCAGTAAATGGTGCATGCGTTTTACATGGCATCCACAGAGATTCTGA 2 0 3' arm Gallus_gallus mirnest 100 100 -24.7 ((...)).(((((((((((((((.((((.(((......................(((((((((((....)))))))))))...))).)))).)))))))))))))))....... (-24.7)