mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AACTATGAGGAAATGGAGATC GCTCTGCTTACTCATACATAC TAGCTGCCAAATGGATCGGGTTTGAAAGGAGAGCTCTGCTTACTCATACATACTCATCTTTTCTATGGATAACTATGAGGAAATGGAGATCTCCTTCCATTCCACCTGTTTTAAAAAGCT TTGTTCAGGGAGACTGGGGCTTTTAGCCTTACGGAAGAGCATAAAGAAGATAGAATAACCTGTAGGTTGGTACACTCTCTAACTGACTACTCTCATGGAGAATGGATTTAATGAAAACCATAAGTCCTGAAGAATGGATTTTAGTGAAGACCATGAGTTGAACTGATTCCTTGAAGCTGCTGTAACTCATGTGTAGCTCATCTAGCTGCCAAATGGATCGGGTTTGAAAGGAGAGCTCTGCTTACTCATACATACTCATCTTTTCTATGGATAACTATGAGGAAATGGAGATCTCCTTCCATTCCACCTGTTTTAAAAAGCTAAAAATGAACTAGTTAGCTTGTTTACCATATCCAGTTCTTCATACCGTATGGAGGATCCTTGCAGGTTTCTAACGTTACAGCAAACAAGCACACTTGGAAAAGAGCTGTTTCTTACCTTGTGTATTCAGTTTTATGTCCTGACCTTGAAATGAAATGTGTACTGTATCATTTTACTTGTCAAATGCGGAACCTAGG 5 0 3' arm Gallus_gallus mirnest 100 gga-mir-1684 6e-46 -31.8 .((((......((((.(((((.((.(((((((.(((((.((.((((((..((.((((.......)))).))..)))))).)).))))).))))))).))....))))).))))...)))) (-31.8)