mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGGGGTGTGTGCATGTGCGT GCATTNTGCACTTACTCCCCAG TCAGTTGATTTTGCATTNTGCACTTACTCCCCAGGATCTACTCTTTTGGTCAAAACAAAAATGCCAGTGCAGNTTGAGGGGGTGTGTGCATGTGCGTGTGTGTATG GGGCCAAAGTCTGGCACGAGGTGTTCTCACCGCGTGTTGGGCTGCGGAGGGGCCGCCGGATTTAGACACAACGCTATGAATCAGGAAAAACTAGCCAAGCTTCAAGCTCAGGTCCGAATAGGAGGAAAGGGAACAGCTCGCAGAAAGAAGAAGGTGGTGCACAGAACAGCAACAGCTGATGACAAAAAACTTCAGAGTTCGCTCAAAAAACTGGCAGTAAATAACATTGCTGGCATTGAAGAGGTGAACATGATAAAAGATGATGGAACGGTTATTCACTTCAACAACCCCAAGGTTCAGGCATCCCTCTCTGCTAACACTTTTGCAATTACTGGTCATGCAGAGGCTAAACCGATCACAGAAATGCTTCCAGGCATCTTAAGCCAGCTTGGTGCTGACAGCTTAACAAGTCTCAGGAAGTTAGCTGAACAATTCCCAAGACAAGTGTTGGACAGTAAAGCACCAAAATCTGAAGATATTGATGAAGAAGATGATGATGTCCCAGATCTCGTAGAAAACTTTGATGAAGCATCAAAGAATGAAGCTAACTAAATCATTAATAGTTCTGGAAGCTGGCATGGACTAGATTTAAGAAATCAGCTATGTGGTTCCAAAGTTTTAAAGAAACAGAGAACATCATCTGGTTAATAGTTCAGTAATATAAATATTTTGTATTTTTATGATACCTGTTTGTTCAGCATTTTNCTGGTCAGTTGATTTTGCATTNTGCACTTACTCCCCAGGATCTACTCTTTTGGTCAAAACAAAAATGCCAGTGCAGNTTGAGGGGGTGTGTGCATGTGCGTGTGTGTATGTGTGGTGGGGTGTACATATANGTGGAGAACAAATTGGAGGACACTTTTTATTTAACCATCTTTCCCTTTTCTTTCGAAAGAAAGAATAAAAATGAATCTCC 4 1 3' arm Gallus_gallus mirnest 100 bta-mir-669 0.000005 -28.8 .......((..(((((..(((((.(((((((..((..((......(((((............)))))...)).))..))))))).))))).))))).))....... (-28.8)