mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGCCAAAAGAGAGTTGCCCTG GGGCACCTCTTCACTGGCATG CATATCAGCAATAGGGCACCTCTTCACTGGCATGTATAAGTATAATATACTAATTCTTCAAGTATTTCTACGAGTCACATACATAACACGCCAAAAGAGAGTTGCCCTGTTGCTGCTTT ACATGACTAAAGATCTCATAATTTTTGCTGCCTCAGTTTTTTTCTCCCTCTCCACTTCTGTTCTTTTAAACTTTTATTATCATTATTATTAGGAAGTTCCAAAATGGAGGAGTTGAATGGACCAATAATAAAGTTATCTGACCCTTGGGTGAAAGGAATCATCATTTATATATTATGAGCATCAAATTCAAATCTGATCTGATGAAAGGAAATAGCATTTGTGAGTGGATATCCATAGCATAAGCCTCAGTCCTATTCAAGCATATGCCAAACCTCTTTTTACTAGTTTGGTTTATTCCATCCTTCATAGTTATGAGTTCTAAGCAAAGCTTGCAGTATAAAAAGATAGAGTGCGCAAAGCTCAAGGAGGCAACTGCTTCACCATCAGTAAGCATATCAGCAATAGGGCACCTCTTCACTGGCATGTATAAGTATAATATACTAATTCTTCAAGTATTTCTACGAGTCACATACATAACACGCCAAAAGAGAGTTGCCCTGTTGCTGCTTTAGCTTAAAATAATCTCAAAATGCTAATCTTTACATTTATATATGTACTTA 5 0 3' arm Arachis_duranensis mirnest mir-399 0.000002 pvu-MIR399a 0.00000009 -35 .....(((((((((((((.(((((...((((((((((..(((.((.(((((.........))))))).))).......)))))).....))))...))))).))))))))))))).... (-35)