mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGCAGCACATCATGGTTTGT AGACCATTCTGGGCTGCCTCA TCAGTGGGCTTTGAGGAGATGTAGCAGCACATCATGGTTTGTAGGGACAAGGAGATACAGACCATTCTGGGCTGCCTCATTACCTCAAGGATAAGAC GGGAACTGGACTCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACGAGGCACGCAGTCAGCTCTGTCCTGCCAAGCTGTGCATTCAGCTGCTGGCGCTGTGATTCCTGGCCAACAGCTGATGCACTGCAACCCCTAAGGGTAGAATGAAAGACAGTGGATCATTCCCCTCACAAGCTCTGGGGGTGCAGCTGTGCCATGCCCCAGCACTGTGGGTTTGGGGTGGGGGAATGGGGTATTTCTGTCTGCACTGTGTAACTGCTTGTTCTTTGTAGTTGCAGGCTGATAGCACCGGGAAGGAAAAAACCCTAAGCAACACAAAAGTCCCGAGGTGGTAATGCATGCATGTTCATGTCTTCGTGTAGAGTGTTCATCAGTGCCTTATGTCATGAGTTAAAAATAATAATAACAATAATAATAACCAAAATACCATTTGGAATGCCAACATTCAGTGGGCTTTGAGGAGATGTAGCAGCACATCATGGTTTGTAGGGACAAGGAGATACAGACCATTCTGGGCTGCCTCATTACCTCAAGGATAAGACAAGAAAGTGAGCTTCTGGTTACCATAGGGGTGGAGGCTGACATGTCCCCATACCCCTTAGCTCAGGTGCACGGGGATGTGCAGGTACACCTGTCTGTGGGGTGGTTGTGCAGGAAGGGCTCTCTGCTCCTCCTGTGCAATTTGAGTCTATCCCGGGTGGAGCAGCACCTCCAGAGCAATATTGCTCCACGTTCAGCCTTTTCCCATCTCCCTCTGATTTGGGGGGTGGATGGATCGGAGGGTTGGAGGCTGTAGGCTGATTCAAGAGTCTTGGACAGAAGCCAGACGTGAAACTCCCGCCCCTTTATGTACTCATGGGGACTATAGCATGGTTCAGAACGAATAATTTATTGATGACTTAAGGAACGAAAAGAAACCCTCATGCCAACCTGACTCCCGCCCATCTTAACTCCGATGGGACGGACCCCCATACCTTAAAACTTTTCTTCACGCTTGCTCCCCAAAAGATAGTCACCCCTACTAGAACATCAAATCTCCTCCACCCCCGAATTCCCTGCACGAATTTAGAGGCCTCCGAGAGACCCGATATCGTGCTTTTAGGAATTTCCACACTTCCCCCTTTCCTACCATTTGCCCAAAAAGCTCGGGGGTAATAGAGATATTATATTCCCCCACACTTCCCTTTTTTGCATTGGGATTGATAATGCGGAAACCTTGTGCTGTGTTGGGGGTCTTTTGTGGCGCAAAAAATAAAGCCCTTTTTTAAAGTGAGTAAAAAATAAAATAAAAAATAAAAAAACAATCACTCTTTTTTGTTGGGGTGTTGTTTCACGCAGGACCCAACAAAAAAGATGAGCGCCCTTCTCTCACGAGTCACTCTTCTTTTTTATACCAC 5 0 5' arm Gallus_gallus mirnest mir-15 3e-41 tgu-mir-15c 3e-41 -34.7 ((..((..((((((((.((((..(((((.((..((((((((((............))))))))))..)).)))))..)))).)))))))).)).)). (-34.7)