mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACAGTAGTCTGCACATTGGTT CCAGTGTTCAGACTACCTGTTC CCGGAGATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCTGTTGTACAGTAGTCTGCACATTGGTTAGACTGGGCAAGGGAAAGC CAAGACTGGAAATCACAGCACTTCAGTGTGTTTCAGTGAGTGCTGCAGAGTGTGAGGGAGAGCCGAGCACAACCCGTGATGCAGGAAGGCAGTTTTTCCCAAAGACTAAAAGAGGATTTAAAATAAATAAATAGAAGCGTCCGGAGATCCTGCTCCGTCGCCCCAGTGTTCAGACTACCTGTTCAGGACAATGCTGTTGTACAGTAGTCTGCACATTGGTTAGACTGGGCAAGGGAAAGCAGCGACATGGACTATTGGGGACGCCAGTTGCTCTTGCCAAGGAGAAGACAGTTATTGCTCCTTTCAGATCTCATATACAGTATTTTTCTTCACAGGTTTTGCACACTAGGGAATAAGAAACGCTAAGGGACACTGTGAAAAAGGAGGACTGCAGAATAATGCGGGGAAGACATTCTGGTAAGGCCTACTTTGGAAGAACACCTGGCCTATGACCTGGCAAACCTAGGTGACTCCCCCCCCCTTCCTCCAGTCATCACTGCAAGAAAGATGGAGCTCTGATGATTTACTAAAACCTATGCAAGAAATGAGAGAGGTATACTACCTAGACGTGTACTGCTTAGAGAAGTGTACAAGAGCATAGTTGAAGTCGGTCATTTCCTTTTTTTTTTTAATTTAAAATAAAGTTTATTTTTGCCCACAAACTAAAAGGGTAAATTTAATATTTTGTTTTTAACTTGTAGCAATCAGTATAAATATCTAAGGAGCTATATAGGACCTTTTAATGCAGAAGAGGCTTGCTAGAAATCTG 3 1 3' arm Gallus_gallus mirnest mir-199 4e-50 gga-mir-199-2 5e-52 -35.9 .......((((((((.(((...(((((((.((((((((.(((.(((.......)))....))))))))))).)))))))...))).))))..)))).... (-35.9)