mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGTTCTTCAGTGGCAAGCTTT AGCTGCCAGTTGAAGAACTGT TGCCCGGCAGCAGTTCTTCAGTGGCAAGCTTTATGTCCTTCTCTAGTAGCTAAAGCTGCCAGTTGAAGAACTGTTGAATGTA TTACGGCGGGGCCGAGCCGGGCCGTGGTGTGGTGCTGTCGGTTCCGGGCTGGGCCGCTCCGCGCAGCTGCTGCCCCTCTGCCCGCTCCTGGCTGCCCGGCAGCAGTTCTTCAGTGGCAAGCTTTATGTCCTTCTCTAGTAGCTAAAGCTGCCAGTTGAAGAACTGTTGAATGTAGCCACGTTCATCGCTGCGACGTCGGATGTCAGCTGTAGCCGTGCCCTGAGCCACCGGGATGAGTGAGCCAACAGCATCCCATAGATGCACCTCGAGGGAGCTGAGGAGGAGCCCGGCGGGGATGAGGAGCCTCCAGGCAAAGCCAGGGCTGTAAAACAGGTCATGGGGACCCTCCCCACGGCGGGGTGGGATTGAATTGGAACGGCCAGAGACATTAAACTTTGTGTTTTCCTGCAAAAA 0 2 5' arm Gallus_gallus mirnest mir-22 4e-40 gga-mir-22 2e-41 -30.6 ....((.(((((((((((((((((((.((((((.((............))))))))))))).))))))))))))))..)).. (-30.6)