mature_miRNA	miRNA*	pre-miRNA	EST_contig	mismatches	bulges	arm	species	source_database	RFAM_best_hit	RFAM_lowest_evalue	miRBase_best_hit	miRBase_lowest_evalue	folding_energy	secondary_structure
TAAAGCTAGATAACCGAAAGT CTTTGGTTATCTAGCTGTATG AATAAAGCTTTGAGGGAAGCGAGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTTTTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAACTCCTTCAAGATCATCGTACAG GACTTTTGTGAGAGTGGAGAGACTTACAACGCACAGAGAGGCCTGCGGTGGGATGGATGCTTCTCGCTCCTAAAACAGCCAACGCACCTTCATCGTTGATGTTGTTTTCTGAGGGGAGCAGACAGACCGTGGGTTATGCTGTCGGAAATCAGTGGCTGGAAGGAAAAGTTGGGAATAAACTCTAAAGGTGATGGATCTCCTTTGGATGTTACTGGCCGCACATGTAGACAGACACACAAACCAGGGCACAGCTGCATGAAAGGATGGAATTTTAAAGCAGGACTGGTGCTCCTGGAGGAGACAGCATGGCTGTTTGCCAGGGAGAATCTGGATTCTAGCAAGGAAAATTATTATTATTAATAGTAATAATAATAAAGCTTTGAGGGAAGCGAGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTTTTGGTCTTCATAAAGCTAGATAACCGAAAGTAAAAACTCCTTCAAGATCATCGTACAGCGTGTGAAAATGAGAGACTGCTGCAAGAGACAGTAAAACCTGAGACAGGTCGGGAACGCTCATTGCACCGAACGCTTTTACAGCTGGAGGTGGGAGCGGAGGGCGCTACATGGCGTGCTTATCACTCATCCCAAAATGTGGAGCTGTCAGATGCCATGGGATGGATGGCTGCTGGTAGCAAACAATGCCAGTGTGACTGCTGCCATTGCACAGATGGATAAACCACGACCCAGGCCAGTAAATGCTTAACTGAGAAGACACGTATACACACACACCTGTATATATATATATTTCTTATATATATATAAGAAAGCTGTTTGGAAATGCTGAGTTTCATTTTCCGGAACGATGCATTGCAGTGAGACAGCCTCAGAAATATTCCAGCAGCTGCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGTGTGGACTGAGCCAGGACGAAAACAACCCCAGACCTGTCTGGTGTGCATCCAAGGCAAAGCGCCGGGGTCTGTTCCGAACAACGCCAAATCAGGCTTTCGGAAAGTTTGCACTGCAGTGTAGGCAAGCTTAATAATTTATACCTAGTAAGAACGCGGTGGAGCTGCACAAAGATTGACAAAAAGGTGATGGGGCGATTTTTTATTCTTTCTATTCAGAAACGCCAAGCACAGATGCTTCTCTGTTCCCAAGAAGGTTTCCTTGGAGGAAAGCTACTGAAGCAGAAAGACATGATGGACGACGAGATCGCTCCCCCCTTGTCAAAGT 2 0 3' arm Gallus_gallus mirnest mir-9 1e-19 rno-mir-3597-2 9e-48 -41.4 ......((..(((..((((.(((((.((((.(((((((((((((((.((((((..........)))))).))))))))))))))).)))).)))))))))....)))..)).... (-41.4)