mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTGAGAGGGCTTGGGGAGAG TCCCCATTCCACTCCTAGCAG CGAGCCTGGGCTTGGAGCAGTGCTGAGAGGGCTTGGGGAGAGGATTGTAGTGGAGCTCCATCCCCATTCCACTCCTAGCAGCTCTCTGGCCATCCACCC GGGCAGCGCTGCCCTGCATTACGAAACGTGATGTTTTATTAATGCTCTTCCTCCCCCCCCAACCCGTTGCAGCGCTGCCTGTGAATGAGAGCTGTCAGTTCCCCGTCGGTGTCACGCGGAGCACGAGCGGACGGCGCTGAGCACCCTGCGAGGACACCACCCGGCCGGCGCAGAACGAGCCTGGGCTTGGAGCAGTGCTGAGAGGGCTTGGGGAGAGGATTGTAGTGGAGCTCCATCCCCATTCCACTCCTAGCAGCTCTCTGGCCATCCACCCCCGCTGCTGCCGGCCGAACACGGAGCCGCGTCCGCCGAGCCCTCGGGAAGAGGCCGGGCGTGTCGGGTGGGCGCCGGGCGGCCGAGCCGAGGTCGTTGCACTGCCCGGCTCGGCGCCCCCGTCGCCCCGGCGGCCTCCTCTCACCCGTCGCCTTCCCCGGGTCCCTACCCACGGTCCCGTGCCGCCGCCGTCGCGATGTGCGGCCGTTGGGTGAGCGGAGCGGTTGGGAGCGGACGTGAGGCGCTGCCAAGGGTTAGGAGGGTCCGTGCCTCACTTTCGTAGCCTCTTGGTTCACACGGGAACCCGACGCTTGNGTGCAGGGGAAACTCGCAGGCAGGCGTAAGTACCGGGCCGCGGAAGCGTGTGGGCCGCACGGGGATGGCTTTGACATTTCTAATTGTATCTTCC 5 1 5' arm Gallus_gallus mirnest 100 tgu-mir-2954 3e-35 -36.9 ........((((.(((((..(((((.(((((..((((((..(((..((......))))).))))))..)).))).))))))))))..))))........ (-36.9)