mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CATCCCCATTCCACTCCTAGC TGAGAGGGCTTGGGGAGAGGA GAGCCTGGGCTTGGAGCAGTGCTGAGAGGGCTTGGGGAGAGGATTGTAGTGGAGCTCCATCCCCATTCCACTCCTAGCAGCTCTCTGGCCATCCACC GGGCAGCGCTGCCCTGCATTACGAAACGTGATGTTTTATTAATGCTCTTCCTCCCCCCCCAACCCGTTGCAGCGCTGCCTGTGAATGAGAGCTGTCAGTTCCCCGTCGGTGTCACGCGGAGCACGAGCGGACGGCGCTGAGCACCCTGCGAGGACACCACCCGGCCGGCGCAGAACGAGCCTGGGCTTGGAGCAGTGCTGAGAGGGCTTGGGGAGAGGATTGTAGTGGAGCTCCATCCCCATTCCACTCCTAGCAGCTCTCTGGCCATCCACCCCCGCTGCTGCCGGCCGAACACGGAGCCGCGTCCGCCGAGCCCTCGGGAAGAGGCCGGGCGTGTCGGGTGGGCGCCGGGCGGCCGAGCCGAGGTCGTTGCACTGCCCGGCTCGGCGCCCCCGTCGCCCCGGCGGCCTCCTCTCACCCGTCGCCTTCCCCGGGTCCCTACCCACGGTCCCGTGCCGCCGCCGTCGCGATGTGCGGCCGTTGGGTGAGCGGAGCGGTTGGGAGCGGACGTGAGGCGCTGCCAAGGGTTAGGAGGGTCCGTGCCTCACTTTCGTAGCCTCTTGGTTCACACGGGAACCCGACGCTTGNGTGCAGGGGAAACTCGCAGGCAGGCGTAAGTACCGGGCCGCGGAAGCGTGTGGGCCGCACGGGGATGGCTTTGACATTTCTAATTGTATCTTCC 4 2 3' arm Gallus_gallus mirnest 100 tgu-mir-2954 3e-35 -36.9 .......((((.(((((..(((((.(((((..((((((..(((..((......))))).))))))..)).))).))))))))))..))))....... (-36.9)