mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGCACTGCCTCTTCCCTGGCT ACAGGGATGGAGCAGAGCAAG GAGGGGAGAGGAGACAGGGATGGAGCAGAGCAAGGGATGGGGCAAACAACAAACTTACTTTCTTGCTTCCACTACGTGTATGTGGATGTGACGAGTACAAGGAGCAAACTGCGTGCAAGAGAGTTGTGAGAGATGAGAGCTGATGGTGTTGTTGCTCCCTCCCCTGCACTGCCTCTTCCCTGGCTCCCCTGCATC AGTAGCATGGGCGTTGGCAGCATCAGGTGAAAATGGTGAACAAACAAGTATTGAGAGAGAATTTGTGATTGGAGAGGGGAGAGGAGACAGGGATGGAGCAGAGCAAGGGATGGGGCAAACAACAAACTTACTTTCTTGCTTCCACTACGTGTATGTGGATGTGACGAGTACAAGGAGCAAACTGCGTGCAAGAGAGTTGTGAGAGATGAGAGCTGATGGTGTTGTTGCTCCCTCCCCTGCACTGCCTCTTCCCTGGCTCCCCTGCATCACCTCCCTCTCTCTCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTAGATGCTATATTTTTCTTACTACTACATTTGTTGGAAAAACATGAAACCGGAAGGGGAGATTGCAACGAGAAAGTGGCATTTTATTTGATTTTGACACACATTTTCCAGTCATGTTCTTTCGAGGTGTTTGCAGGAACTATTTACTGGGAGCTCCGGCAAAGACGAAGGCAACAAATCTAGACACTGTCGCCTGGAAGAAGCAACAAATAAAAGAGTAGATGTGCGCTTGCTGTTTGTTTATGGAAATTTTGATAGCCGGCCTCAGCTGATGTGAAATCAATTTCAGTGTAATAGGTCTAGCTGCTGCCTAAAATCTTCTTTTCGGCTGAAAAGCTTATATGTTCTGACCACGGTCGAATTGATCGGCTCTGGCTGTATTACTTAGTTTCATCTCCCAACTTGGATAAATCTTTTACTATTTAAGGAGAAAAAAAAAGAAAAAAAAGCCGCCTCCGGGCCCA 4 0 3' arm Festuca_pratensis mirnest MIR408 9e-19 osa-MIR408 5e-20 -76.2 .(((((((......((((((.((.((((.(((.((((.(((((((.(((((...((((((((...(((.(((.((.(((((((((.(((..............)))..))))))))).....)).))).)))..))))).)))...)))))))))))).)))).))).)))).)).)))))).)))))))..... (-76.2)