mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTCCCTCCGTTCCAAAATG TTAAGGAGCTGAGGTAGTAGT TTAGAAAATAGGCTCTTTTTACTACTCCCTCCGTTCCAAAATGCAAGACGTTGTGGGCAGTTCAATCTGAACTGCCAAAACTTCTTATATTAAGGAGCTGAGGTAGTAGTAGTATAGCAGTTTATTGGA AGGCGAGGAGAAGAGGGCTCTGGGGAGAGTGAAAGACATCACCGACTACTTCCACGGCGACGCCTCAAAAGAGGAGGCTCACCCCCTGAGAATATTCATGGTGGTGAGGGACTTCCTGTCGACGCTGGATCATGTCTGCAGGGAGGTTGGCCGGATGCAGCAGGACAGAACCGTCGTCGGGTCCGCAAGGTCGTTCCGTATCTCAGCGACAACCTCATTGCCGGTTCTAAGTTTGTACGGCCAACGACGGGAGAACAAGTCCGACGACGATGATAGTATGTCGTCGTAGGAGTGGGCTGTCAAGGATCAGGCTGGATTTTGGAATGCACATAGCACACACGAACTTTGACAGCTTTGGCAGCTGCAGGAAATGTTACTATGATAGTTTCAAGGAAACACATATTCAGTGTTGGGATGGCCAAGGTTAGGAGAGATCGGGGTCGACGGAGTGTTTACGTTAGGATTATTCTGATTTTTTGTGTACAAAAGGAGAACGGTGATAAGATCTTTCTCTTTCTAGTTTCTATTGGGTAATTTGCCATGTAGAGGCTTAGAAAATAGGCTCTTTTTACTACTCCCTCCGTTCCAAAATGCAAGACGTTGTGGGCAGTTCAATCTGAACTGCCAAAACTTCTTATATTAAGGAGCTGAGGTAGTAGTAGTATAGCAGTTTATTGGAAGATTGTTACACTTTTTTTTTTTCTTATGTAATTAGTATAGACTGGAAATCACTTTTCACGGTAAATAAACTTCTATCTGGCCAAATGATCAGGAACA 4 0 5' arm Festuca_pratensis mirnest MIR1122 0.0001 tae-MIR1137 0.0001 -49.6 ......((((((((((..((((((((.((((.(((((..((((.((((.(((...(((((((((...)))))))))..))).)))).))))..))))).)))).))))))))...)).))))))))... (-49.6)