mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTGCCTCCTCCTCTCCCTCAT GAGGGAGGTGGAGGGGGAGAGG CGGCAGATAAGAGAGGGAGGTGGAGGGGGAGAGGAGCTAGATGAAGAGGTGCCCTCCTCAGCCTCACCTCCAGAGCAAGAGCTAGACGATGAAGAGATGGCAAGAGTTAGGGAGGAGGCAGAGAGGAGTGTGCACAACCTGAACATAGGCGGCGGAGGGTATTACCTCTCTTTCTCCTGCCTCCTCCTCTCCCTCATTTATCTTGT TACATCGCCACCAGACGTAAAGACCTGCTGGAGCTGGTGGTGATGTGTGGAGACCGCTATCACTCTCTGGAGAGGAGGAGTAGAGGAGAGAAGGATGAGAGGGAGAGTGTGGAAGAGCTGCTGGAGAAGGTTGAACAGACTGTAAAAGAGAGCGGGGTGGAGTTCTACAGCTGCCCCCTCTACCAGGAGGCTGAGGCCAGGGTGAGAGAGAAGCAGGCAGAGATAGTGCGGCAGATAAGAGAGGGAGGTGGAGGGGGAGAGGAGCTAGATGAAGAGGTGCCCTCCTCAGCCTCACCTCCAGAGCAAGAGCTAGACGATGAAGAGATGGCAAGAGTTAGGGAGGAGGCAGAGAGGAGTGTGCACAACCTGAACATAGGCGGCGGAGGGTATTACCTCTCTTTCTCCTGCCTCCTCCTCTCCCTCATTTATCTTGTCCTTGTGGCAGGGGTTGACAGGGTGGCTGAGGAGGCTGCCCAAGATGCTGAGGATGGAGTCTCTGCTGGGGGCTTTCGTTGGCCTGTTTGAAGGTGGGGCCCCTTGGCGGATGCTGGGGGCC 4 1 3' arm Salmo_salar mirnest 100 100 -77.3 ....(((((((.((((((((.((((((((.((((((((..(((.((..((((.((((((.((((..(((((..(((....((((.............))))....)))..)))))))))...))))))...))))...))...))).)))...(((((......)))))..)))))...)))))))))))))))).)))))))... (-77.3)