mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTACTCCCTCCGACCCATAAT TATGGTACGGAGGGAGTAGCA CATTAGAAAGTACTCCCTCCGACCCATAATAAGATGTCATTACAACCAATATACCCATATATTATATTATGGTACGGAGGGAGTAGCAGGTAAC ATTGTCTAAATTTGGACGTATCTATATACTAAATAGTGTCTGGATACATCTAAATTTAGACAAATCTGCGACATCTTTATCAGGACGGACCTCTGTAATTAGATTGAGCTTACACACGCATTAGAAAGTACTCCCTCCGACCCATAATAAGATGTCATTACAACCAATATACCCATATATTATATTATGGTACGGAGGGAGTAGCAGGTAACGAGTTTAACTGATCCAAGCAAAATACATGAATCTCACGAACACATAAGCATACTGGAGCCCATGAATCGACAATAAATCAGCACATAAACAACCATTGGCCTGATGAATACGTGAACACATAAACATACTGGACCCCATGAATCGACAATAATTTAGCACATAAACAACCATTGGCCTGATGAATACGTGAATGCAAACGCAGACACACAGAGATCTTAGGAATCGGCAGAACAAATAAACACACGTGGATTTCATGGACAAACACGGATGGCCTGATTCATTCAGGTCCACAAAAATAAGCTGCAGGTTGCTCCACTCATGTGAGCCGAATTCACAAAAAACTCGCAGCCAAGAGAGTTTGGCTTGGCTCTGGCTGCTATAGCTGAGGATCAGGAGATGAACCAAACAGGCCCTAGTATTCAGTAAATCTATTTTCATATAGGATGTTGCAATATGTTTGGGCTAGCTTGTTAGATCTTCATCTTTACTCCACGAACCGTATAATTAAAATCTATCTTCATATAGTAGGATGTTGCAATGTGTTTGGGGTAGCTTGTTAGGTCTTCGTCTTTACTCCACGAACCGTATAGTTAAACTGATGTCTCTGTAGAGTAAATTCGACTCGAGTACCAAAACTACTGCTACCATCTCATTGCCACTAACTACTTCCCAGTTTCCTTATTCTTCTAATCCCTTAAAGAAAGTGCTCACACTTCTGATGTGTGTTTGTTATTTTTTCAGAGATCCAGCAAAGGATGTAATGAAAGATGCTTTACAGGACTTGATGGTGATGGGGCAGCATGTTAGAGGGACTTTTGACAAGCAGTGGCTGATTTAAATCAAACATGCCAGCAGAA 3 0 5' arm Festuca_pratensis mirnest MIR1122 5.0E-6 osa-MIR1436 7.0E-5 -28 ..........(((((((((((..((((((((.(((((.....................))))).))))))))..)))))))))))......... (-28)