mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCCCCTCCTCCTCTCCCCGGG AGGGGGGGGGGTGGAAGGGGGGG AAAAAAATTCCCCCCCTCCTCCTCTCCCCGGGAAGAGGGGGGGGGGTGGAAGGGGGGGGAAAGAAA GGGGGGCTCTCGAAAGCAGTGATTCGATGACTGGACGAATGAGATCTAGTTGTCGCGCCACGAATTCGATGGAATTCACTGCAATAATCCGCTCACAAGCTCCGTAGAGATTATCGATGAACGCGATTTGCACAGCCGGCGATAGTGACGGATACATTTTCCCGCTCAAAAAATCACCGTCCTTCTGGAAAACTTTCCGAAATGGAGAGTTGGCTTTTTCGTCCTTTGTGAATTTTCTTGAAATACCATCCAAGCAGGCGACGAGGCGTGGAATGCGGCCAACGAATTCGGCGCCTTCTGAGCCGAACATGTGACACATCGACGCAAAGAAAAACTCGTATAAATCAATAATCGCTGGTGCAGACTTTGAGCAAAGTGTCGGCAGAAGTGCTGTCATTCGAAGATATCTTCCGAAAAATCTCAAAAGATTCAGAGCAGTATTGCAAGAATCCGAGGGGGGTACACCAGAAGGCTCGTCCGGGGATCCCCGAAAGAAGCTCTCCTGCTTCGTTAGATTCGGATTATAGTTTTCATTTTGAATTTCAGTTGCCGCTGAAGATGTTGAATAGCTCCGTTCAGACTTTTGGCTATAGGATGATTGAAGACGGGATCGGATGGCAGCTTGGCAGAATGGATTCTGCCAATCGTTGCCGATCAGCTCCACGGTTTCTTCCTCACTATTCTCCGATTCTTCTCTGGATTTCGGCGAACTTTCGATTCTAACTGATTCCTTCAAAAACTCGAAGTCTTGCAAATCGAAAATCGTGAACTGAAATGGTACTGGGCACAATGCGAATGATTCGTTTTCAAAGAACATCGAGAGCTCCTCCATTCGCTCGGTATGATATCGGTCCAAGTAGGTCTCGGGCCGTTTTTTCATGGATTCTGCGAGCTTCTGATGGTGTGGGCTGGCCAAATAGGGCCTGCCAATTTTGGTGAATCCCTTGGATGGGATCCTACAAATGTCCAAAATTTGGTTCAAAACTTTTAACTTGGAAAAAGTCCCCAAAATTCAATTAAAAACTTGAAACCCCTGGGAATTGGCGGGCTGAAAACCCTTTTTTTTTTTAAAAACCCCCACGGTTTTTTTGTTAAATGTTTTGGGGGGGGGTTTTCCTTTACCCAAAATTCCCGACCCTTTTGGGGAAATTTTTAAAAAATTTTTTTGGAAAAAACCCCCGGGGGAAAAAACCCCTCCGCGGCACAAACCAAAAAAAAATTCCCCCCCTCCTCCTCTCCCCGGGAAGAGGGGGGGGGGTGGAAGGGGGGGGAAAGAAACCC 3 2 5' arm Caenorhabditis_elegans mirnest 100 100 -38.7 .......((((((((((((((((((((((.......)))))))))).)).))))))))))...... (-38.7)