mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACCTTGTTTGTTGCTGCTCCT GTGCGGCTGCAGACGGGTAT CTAAGCACCTTGGTGCGGCTGCAGACGGGTATCCGGCTCGACGTTCATACATCACGACTTCTTTCCTTTTACCTTGTTTGTTGCTGCTCCTATTGGTTTT GTCCGCTCCGGAGATAGCAGACCGTTCGAGCTCTTTAGATTCTACCTCGAATCAACCATGGCTGTCGCTTTCTCGAATGAGAAGGCTATTACCGACTATTCGGAGCACCGCATCCGTCTGACCTTGACCTCCCAAAACGTTAAGCCGCTTGAGAAGGTCTGCGCTCAGCTCATCGACGGAGCCAAGAACGAGCACCTTATTGTCAAGGGCCCAATCCGCATGCCGACCAAGGTGCTCCGCATCACCACCCGCAAGACCCCATGCGGAGAGGGATCCAAGACCTGGGATCGCTTCCAGATGCGCATCCACAAGCGTCACATCAACCTCCACGCTCCAGCTGAGGTCCTCCGCCAAATCACTTCGATCTCCATCGAGCCAGGAGTCGATATTGAGGTCACCAGAGCCGACTAAGCACCTTGGTGCGGCTGCAGACGGGTATCCGGCTCGACGTTCATACATCACGACTTCTTTCCTTTTACCTTGTTTGTTGCTGCTCCTATTGGTTTTGAAACTTAATGAATCATAATACAAACNNNNGCNCNNNNNNCNTTCNNTTCNNGCNNGNNGCCTCTCTNTCNCCGTTGGTTTTGNNNCTTNNTGNNTCCTTNTCCAAACNNNNNNNNNNCNNNNNNNNNNTNNNNNNNNNNNNNNNCCCNNCNCNNNNNNNNNCNNCNNNNCCTTCCCCCNTNNTCCCNCCCNNNTTCCNTNNNNNCNNNNNNNNNTTCNTTTTNNCCCNNNNNNTNNNNNNCCCNNNCCCNTTNNNNNNTTNNNTTCTTCCCCCCCCCCNTTTNNNNCCCNNCCNTTNNTNNNNNNNNNTTTTTCNNNNNCTT 3 1 3' arm Caenorhabditis_elegans mirnest mir-354 7e-27 cel-mir-354 5e-52 -26.5 ......(((..((.(((((.(((((((((((...((...((.(((..........))).))...))...)))).))))))).))))).))....)))... (-26.5)