mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CAGCTCTGGGCCTCGTTGGTG CTTGCAGGTCTAGTGTCCCT CACATCCCATCCAGCTCTGGGCCTCGTTGGTGAATACCTCCTGACCACTTGCAGGTCTAGTGTCCCTTCCTCCAG CTTTCTCGACCACGCGTCCGGTTATTTTTGTGTGTGCCTCAGATGAATGTGAAACAGATCAATCATGTCCGTATTTAAAACCCAACTGCGACATCCTGTTGCTTTAAAGCAGTGAAGATAAGGTGTGAACGCTCTACCTGGCCCAAGGCCTTGTGTGGAGTGGCCTCTGCCTCCCTCAGCTTTCTGCGCACCAGCCTTCTATCCTTCTCTCAGCCCCTGAACTCCACTGCGTGAGCCGTGTCCTTCCTTCTGACTTCACATCCCATCCAGCTCTGGGCCTCGTTGGTGAATACCTCCTGACCACTTGCAGGTCTAGTGTCCCTTCCTCCAGGAAGTCATCCCTGATTGCCCAATGAGATGAACCCCAGCGGCCTGTTTTCTGTCTTCTCTATAGTGAGTTCTCACACATTTCCTTACATGAGGGCTTCGTCAGGTTGGCCGCGTACACTGCACTGTAGCCTCACGAGTAAGGGCCGGCCTGTGTCTGCTGCCAGACCCCTAGGACCGTGGCACCAGCGCAGTCGTGACTCCGGAAATTCTCATCAGATGAACGAATGAGCATGGTAGAAACATACCTGTTAAGGATACTTCCTGGTGGGCTATTACATTTCGGAACTTCAAAGACTGCCTAATTTAATTTTAGTTACGAATCATGTTGTGAAATGATGAACAAAAATCTTACCATCGTATTCTGATAAAGATAAATGATTCACCATGGNGG 4 1 5' arm Canis_lupus_familiaris mirnest 100 100 -15.2 .............((.((((((((.((.((((.............)))).)))))))))).))............ (-15.2)