mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGCGCCGGGCCCGGGTCTTCC AAGACCCACTCCCTGGCGCCGCT TGTGGCGTACGGAAGACCCACTCCCTGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCATTCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGG GGCTACCCGCTGAATTTAAGCATATTACTCAGCGGAGGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTACGGAAGACCCACTCCCTGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCCATTCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACCGGCACGAGACCGATAGTCAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTGAGAGGTGAACGGGTGGGGTCCGTGCAGTCCGTCCGGAGGATTCAACCCGGCGGTGGTTTCGGTCGTGCCGGTGGTCCGGTGTATCTTTCCCGT 3 2 3' arm Canis_lupus_familiaris mirnest SSU_rRNA_eukarya 6e-62 mmu-mir-5105 5e-28 -60.3 ..((((....(((((((((....((((((((.(((....(((((((.....((.((.....))(((((((.(((....))).))).))))))....))))))))))))))))))...)))))))))....)))). (-60.3)