mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CGCGCCGGGCCCGGGTCTTCC AAGACCCACTCCCCGGCGCCGCT AGGGGGCGNACGGAAGACCCACTCCCCGGCGCCGCTCGNGGGGGGCCCAAGNCCTTGTGGGGGGGGCCCAGCTTTTTTTTGGTGTGAGGCCGGAAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGG GGAGGAAAAGAAACTAACCAGGANNCCCTCAGGAACGGCGAGGGAACAGGGAAGAGCCCAGCGCCGAANCCCCGCCCCGCGGNGGGGCGCGGGACAGGGGGCGNACGGAAGACCCACTCCCCGGCGCCGCTCGNGGGGGGCCCAAGNCCTTGTGGGGGGGGCCCAGCTTTTTTTTGGTGTGAGGCCGGAAGCGGCCCCCGGCGCGCCGGGCCCGGGTCTTCCCGGAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGGTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACGGGGGGGGTCCGCGCAGA 3 2 3' arm Canis_lupus_familiaris mirnest SSU_rRNA_eukarya 2e-22 mmu-mir-2182 0.0000000004 -62.1 ....(((....(((((((((....((((((((.((.((.(((((((((....(((....))).)))))).(((..((((((((.....)))))))).))))))))))))))))))...)))))))))....)))... (-62.1)