mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGTTGTGTGTGCATTTTTAT AGAAATGACTTATGACAATC CAAGTAGAGCCAAGAAATGACTTATGACAATCTTTGTTGTGTGTGCATTTTTATAATAAAACT GAGCTCGGATCCACTAGTCCAGTGTGGTGGAATTCTGCAGATCCCTGCTGGAACAAATTCAAGATGGGAAGTTATCGCTAATTATATGAACATACACTCTTCTTCTGGAGTCAAGAGAACTGCCAAAGATGTTATTGGCAAAGCAAAGAGTCTTCAAAAACTTGACCCTCATCAAAAAGATGACATAAACAAAAAGGCTTTTGATAAATTTAAAAAAGAGCATGGAGTGGTGCCTCAAGCCGACAATGCAACACCTTCAGAACGATTTGAAGGCCCATGCACAGATTTCACCCCTTGGACAACGGAAGAACAGAAGCTTTTGGAACAGGCTTTAAAAACATACCCAGTAAATACACCTGAAAGATGGGAAAAAATAGCAGAAGCAGTGCCTGGCAGGACAAAGAAGGACTGCATGAAGCGATATAAGGAACTTGTCGAGATGGTAAAAGCAAAGAAAGCTGCTCAAGAGCAAGTGCTGAATGCAAGTAGAGCCAAGAAATGACTTATGACAATCTTTGTTGTGTGTGCATTTTTATAATAAAACTGAAAATATTGTACAAAAAAAAAAAAAAAAAAAAAGGGCGGCCGCTCGAGTCTAGAGGGCCCGTTTAAACCCGCTGATCAGCCTCGACTGTGCCTTCTAGTTGCCAGCCATCTGTTGTTTGCCCCTCCCCCGTGCCTTCCTTGACCCTGGAAGGTGCCACTCCCACTGTCCTTTCCTAATAAAATGAGGAAATTGCATCGCATTGTCT 3 1 3' arm Canis_lupus_familiaris mirnest 100 100 -10.6 ............(((((((((.((((((((...)))))))).)).)))))))........... (-10.6)