mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGAGGCAGAGGCAGGAGGAGC GGCCTCCTGCCCGAGCCTCAAT CCGCAGGGCGGCCTCCTGCCCGAGCCTCAATATGTCCTGGGGCCTCAATAAAGTTTCCCTTTCATTGACTGGGACCCCAATGGCCTTCCCCTGGAGGCACAAAAAAATCGTGAGGCAGAGGCAGGAGGAGCTGTGCC CTTTCTCTTCACGAGGTGGGCGAGCGGTTTGGTGGCGGCGGCCTTGCGAGTTCCCCCTTGTACGCAGAAATGCAGATCTTTGTGAAGACCCTGACGGGCCTAACTATCACCCTTGAGGTCGAGCCCAGTGACACCATTGAAAATGTGAAAACCGAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATTTTTGCGGGCAAACAGCTAGAAGATGGACGAACTCTGTCAGACTACAATATCCAGAAAGAGTCCACCTTGCACTTGGTGCTTCACCTGCGAGGTGGCATCATTGAGCCTTCACTCCGCCAGCTGGCCCAGAAATACAACTGCGACAAGATGATCTGCCGCAAGTGTTATGCTCGCCTGCACCCCCGTGCTGTCAACTGCCACAAGAAGAAGTGCGGCCACACCAACAACCTGCGCCCCAGAAAGAAGGTCAAATAAGGCCCCTCCACCAGCTCTTCCTTTGCCCGCAGGGCGGCCTCCTGCCCGAGCCTCAATATGTCCTGGGGCCTCAATAAAGTTTCCCTTTCATTGACTGGGACCCCAATGGCCTTCCCCTGGAGGCACAAAAAAATCGTGAGGCAGAGGCAGGAGGAGCTGTGCCTG 4 1 3' arm Canis_lupus_familiaris mirnest 100 100 -52.4 ..(((.(((..(((((((((...((((((..((....((((((((((((((((.....)))).)))))...)).))))).((((((((....)))))).)).....))..))))))...))))))))).))).))). (-52.4)