mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGAGGTAGGAAGGGTGGTATT TGTCCCCCTCCTCCCTCTGG GAAATTTCCAAGATGTCCCCCTCCTCCCTCTGGCTGCACTGACCCTCCAAACATCCATCTGCAAAAGCCTGAGGTAGGAAGGGTGGTATTAACACTATCA CTTTTTTTTTTTTTTTTTTGCTATAAAATCATCTGGTTTTAATCGCCATCCACATCAGAACTATAGTACATTAGAGTACAAAACCTGTATGTACAATTACAGATAGAAAAAAATGTTCTTTGTGAGGAGCAATTTGCAGCAAATCTGACAAACAGCAAGAGTCATCCCTATTTTGGGTTTGAAAAGAGAACTGGAAATTTCCAAGATGTCCCCCTCCTCCCTCTGGCTGCACTGACCCTCCAAACATCCATCTGCAAAAGCCTGAGGTAGGAAGGGTGGTATTAACACTATCAGGCACTCCTCCTCCTCTCTTAAGGAAGGGGTGAATTTTTAGGAAACATTTCCCATCATTTATTATACTGATGTTCCATCCATCTGCATCATTAGGTTCGGTAGTTACCATGACAATATGATGCCTACAGCAATCTAACTTGATAGCCAGATGCCAGAATGTGAAAAAATAGGACCAGCTAAGAAAGTGAGAGAAATATAATTAATCTGAAGCACATAAAAATGTGCACAAAACTAGGACCAAGAGGGAAACTGCTGAAATGTCACTGAGGAGGGAGTTCTGACGGGAAGCAATAATCAAGTTTCAGTATATAAACTTTGCTAACTAGAGCCGTGAATTGGTCTAGAACTAAGATTGAGGAATGTGTCAATGTTAGTCATGGAAATTGCTCTGGGCACCTCCCCCAAATAATTGCCTGCCACAGAGCCCAGTGGGTTATCATTGAT 3 1 3' arm Canis_lupus_familiaris mirnest 100 100 -24.7 ...........(((((((((.((((.((((.(((((((.....................))))...))).)))).)))).))).)))))).......... (-24.7)