mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCCGGCGGGAGCCCCGGGGAG GTCCGGTGAGCTCTCGCTGGCCC AACGCAACCGATCCCGGAGAAGCCGGCGGGAGCCCCGGGGAGAGTTCTTTTTTTTTTGTGAAGGGCAGGGCGCCCTGGAATGGGTTCGCCCCGAGAGAGGGGCCCGTGCCTTGGAAAGCGTCGCGGTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGGGAGA ATGGTTTTGTCGGTCCTGAGAGATGGGCGAGCGCCGTTCCGAAGGGACGGGCGATGGCCTCCGTTGCCCTCAGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGTGGCGGAGATGGGCGCCGCGAGGCGTCCAGTGCGGTAACGCAACCGATCCCGGAGAAGCCGGCGGGAGCCCCGGGGAGAGTTCTTTTTTTTTTGTGAAGGGCAGGGCGCCCTGGAATGGGTTCGCCCCGAGAGAGGGGCCCGTGCCTTGGAAAGCGTCGCGGTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGGGAGAGGGTGTAAATCTCGCGCCGGGCCGTACCCATATCCGCAGCAGGTCTCCAAGGTGAACAGCCTCTGGCATGTTGGAACAATGTAGGTAAGGGAAGTCGGCAAGCCGGATCCGTAACTTCGGGATAAGGATTGGCTCTAAGGGCTGGGTCGGTCGGGCTGGGGCGCGAAGCGGGGCTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCCTCCCACCCCGGGNGCACCCCCGCCCGGGGCCCGCCCNCGCGGNCCTCCTCCGCCCCACCCCGCGCGGTTCCCCCCCGCTCTCCTCTTCTCCCCCTCCCCCCCTTCCCGGNGGGCGGCGGGGGGCCGGGGAGGCGGGGCGGGGGGGGTTGCGGCGGGGGCCCCGGCGGCGGGGGAGGTCCCCCG 4 2 5' arm Canis_lupus_familiaris mirnest 100 bta-mir-2889 0.0005 -71 ...........(((((((...((((((((((((.(((((....(((((((.........))))))).((((.((((....((((.....))))....)))))))).((((((((((.((...))..)))))).)))))))))...)))))))))))).........))))))).... (-71)